Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02143 GAGAAAGTGTGTGTAGAGTCCAAATCTAAATCTGGGAACTACAATTTTCCATTTCTTCGCTGTCTGAACATCTTCTCTTTCTCGTCTTCGTCTTTTCTCCTTCTTCTTCTTTCATAACCCTCCATTTCTCGTCAATTCAAGTTTGTTGACATGGCTACGCATACGCCAAAAAATATCCTCATTACTGGAGCTGCTGGATTCATTGCGTCTCACGTTGCGAACCGGCTTATCCGGAATTATCCCCTGTACAAAATTGTTGTTCTGGACAAGCTTGATTATTGTTCAAATTTGAAGAACCTCATTCCTTCAAAATCGTCTCCAAACTTCAAGTTTGTGAAGGGGGATATCGGAAGTGCTGACCTTGTGAACTACCTTCTTATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCTTTTGGCAACAGCTTTGAATTCACCAAGAACAACATATATGGTACGCATGTCCTGTTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTGCTCCCAACAAATCCGTACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGCAGGTCATACGGATTACCCGTGATCACAACACGTGGGAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCTATGCAAGGCAAGCCTCTTCCAATCCATGGAGATGGTTCTAATGTGAGGAGCTATCTATACTGTGAAGATGTTGCTGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACGCAGATACCTGTATAAAATTTGTTGAGAACAGACCATTTAATGATCAGAGATACTTCCTTGATGACGAAAAGCTGAAGAACTTGGGTTGGTCTGAGAGAACAACATGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGACTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGATTGGAGAGACATTTTGATGGATCTGAGGAAGAAAAACCTTCATCATATGTCTCAACTAATACTCATATGGTGGTTCCATCATCCAAGAATGTTAGTTCTTCGCAGAAACATGCTCTCAAGTTCTTGATCTATGGCAGGACAGGTTGGATTGGGGGTTTGTTGGGGAAATTGTGCGAAAAACAAGGAATTCCCTATGAATATGGAAAAGGACGTCTAGAGGATCGATCGTCACTTGTGGCTGATATTCAGAATGTGAAACCAACACACATTTTTAATGCAGCAGGAGTGACCGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAAACAGAAACCATCCGCACCAACGTTGCTGGGACTTTGACATTGGCTGATGTCAGCAGAGAGCATGGACTCTTGATGATAAATTATGCTACTGGATGCATATTTGAGTATGATGAAGCTCATCCTGAGGGTTCTGGCATTGGATTTAAGGAGGAAGACAAACCCAACTTCATCGGTTCTTTCTATTCCAAAACTAAGGCTATGGTAGAAGAGCTCTTGAAGGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCGATTTCATCTGACTTGAGTAATCCTCGCAATTTCATCACAAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCTATTTCAATTGAGATGGCAAGACGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCTGTGAGCCATAATGAGATTCTTGAGATGTACAGGAATTACATCGATCCAAACTTCAAGTGGGCTAACTTCACACTTGAAGAGCAAGCCAAGGTGATAGTTGCTCCAAGGAGCAACAACGAGATGGATGGAACCAAACTGAAGAAGGAGTTCCCTGAGGTTCTTTCCATCAAAGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAAAATATTCAGCAGTTTCATGTTTTAGATCAAGATCAGAAGGGCTACATAGATCACTCATTATTTCATTGTGTTTTGATAAGAACCACACCATAAAAGCTAGTGATGTAGTACTTGTTCTCTTTTAGCTATAAGTGATTCCAGTTTCAGCGTAGTTCCATCTTGTTACAGTGTTTAGAGGGTGACAAGTATTATAATTGGGCCAGATGTTTGTTCCTAAGTTAATTAACATTTCAGCAGCTTTATTCTAATTTTTAGTGTCCTTTGTTATTAAGGTCAGCCTTAGATAGGGGTTTTTGTTACCTAAAAGCCTACTTTGGGCAGCTTTTGCATCCTAGAAAACATGTATTCTTTTATTGCTCATATATTGAATCTTTTTTTGGGCATGCCGTGAAATGGATGTTTCTGAGATGTTCATTAAATAAGAAGTTAATGTTGTA 2597 0.4128 MATHTPKNILITGAAGFIASHVANRLIRNYPLYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDADTCIKFVENRPFNDQRYFLDDEKLKNLGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSEEEKPSSYVSTNTHMVVPSSKNVSSSQKHALKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGLLMINYATGCIFEYDEAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMARRNLRGIWNFTNPGAVSHNEILEMYRNYIDPNFKWANFTLEEQAKVIVAPRSNNEMDGTKLKKEFPEVLSIKESLIKYVFEPNKKTA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02143 669 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Pste3g02143 669 Gene3D - 9 313 - -
Pste3g02143 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Pste3g02143 669 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Pste3g02143 669 NCBIfam dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Pste3g02143 669 CDD dTDP_HR_like_SDR_e 385 657 - -
Pste3g02143 669 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Pste3g02143 669 FunFam UDP-glucose 4,6-dehydratase 9 209 - -
Pste3g02143 669 Gene3D - 373 669 - -
Pste3g02143 669 Gene3D - 200 322 - -
Pste3g02143 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 378 659 IPR036291 -
Pste3g02143 669 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 375 669 - -
Pste3g02143 669 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 3 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02143 Pste-Chr3 14906447 14910064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02143 8 321 Miscellaneous Gene Families AT4G00110 27.381 2.24e-21 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02143 3 14906447 14910064 Pste3g02143 3 14906447 14910064 ECH