Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01989 ATAGAACTAAGTAAGTACAAAGTATTAGGCAGTAGCCAAGAGAAATTATGACAATGCCACGTATAGTTGTAGCATGCAAAAGTTACTGTGTTAGTGTTGATGAGACCCAACCCCTGACCTTCACACTCCTCATCGCAATGGGTTTCATGGTCACACTCCACCGCCTCATCTCCCTCTTCACATGGATCTACCGAACCTGTTTCCGAGCCGAGAAGGATCTGGTCCGGACCTACGGTTCATGGGCACTGGTGACCGGAGCCAGCGACGGCATCGGAAAAGCCTTCGCCCACCAGCTGGCACAGAGAGGCCTCAACCTGATCCTGGTTAGTAGAACCTTCCAGAAGCTGGAAAGCGTTGCGTGTGAAATAAGAGGAAGACACCCCCACACGCGCGTGAAGATCGTTGAGATGGACTTCGGCGCTGACAACATGTGGGACGGTCTCAGACGCGTTGAGGAGGCCACTCAGGGTTTGGATGTTGGTGTTCTGATCAACAACGTTGGGATCACGTACCCGAGTGCCATGTTCTTTCATGAGGTGGAGGAGAAGGTCTGGCGGAACATTGTTAGAGTCAACATCGAAGGAACCACCAAACTCACTAAACTTTTTTTGCCACCAATGTTACAAAGGAGAAAGGGTGCCATTGTTAACATCGCTTCCGCTGCTACTGCACTTCTCCCTTCTCATCCTCTCTTTACCGTTTACGCCGCTACAAAGGCTTACGTGGATCGACTATCAAGATCTCTGTACGTGGAGTATGGACAACATGGGATACATGTGCAGTGTCAGGCACCACTATATGTTGCAACGAATATGGTATCAAGGGTGGCATGTATTGAGAGAGATTCTGTGTTCGTACCAACAGCGGAAGCTTATGCCAGAGCTGCAATGGGTGAAATTGGGTACGGACCAAAATGCACACCTTATTGGGCTCACTCAATTCAGTGGTGTTTTGCAGAATTAATCCCCGACCCACTACTTGATTATTGGCGTTTGTCCATTGGTATCCGCCGCAGG 1016 0.4951 MTMPRIVVACKSYCVSVDETQPLTFTLLIAMGFMVTLHRLISLFTWIYRTCFRAEKDLVRTYGSWALVTGASDGIGKAFAHQLAQRGLNLILVSRTFQKLESVACEIRGRHPHTRVKIVEMDFGADNMWDGLRRVEEATQGLDVGVLINNVGITYPSAMFFHEVEEKVWRNIVRVNIEGTTKLTKLFLPPMLQRRKGAIVNIASAATALLPSHPLFTVYAATKAYVDRLSRSLYVEYGQHGIHVQCQAPLYVATNMVSRVACIERDSVFVPTAEAYARAAMGEIGYGPKCTPYWAHSIQWCFAELIPDPLLDYWRLSIGIRRR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01989 323 Pfam short chain dehydrogenase 65 259 IPR002347 -
Pste3g01989 323 Gene3D - 57 285 - -
Pste3g01989 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 60 283 IPR036291 -
Pste3g01989 323 PANTHER RH59310P 25 323 - -
Pste3g01989 323 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 59 291 - -
Pste3g01989 323 PIRSF 11-beta-HSD1 14 323 - -
Pste3g01989 323 PRINTS Glucose/ribitol dehydrogenase family signature 191 207 IPR002347 -
Pste3g01989 323 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Pste3g01989 323 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Pste3g01989 323 PRINTS Glucose/ribitol dehydrogenase family signature 142 153 IPR002347 -
Pste3g01989 323 PRINTS Glucose/ribitol dehydrogenase family signature 65 82 IPR002347 -
Pste3g01989 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 153 IPR002347 -
Pste3g01989 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
Pste3g01989 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 205 IPR002347 -
Pste3g01989 323 CDD 17beta-HSD1_like_SDR_c 63 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01989 Pste-Chr3 13568326 13572543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01989 14 323 Lipid Metabolism Gene Families AT1G24470 55.305 5.59e-124 356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01989 3 13568326 13572543 Pste3g01989 3 13568326 13572543 ECH
Pste3g01989 3 13568326 13572543 Pste7g02359 7 22294592 22306278 PCT