Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01955 ATGTGGTGCACTTTTTAATCACCAAAATCGTTGTTCATTGATGGTCGCCGACGTGCATCCAAATCCGAACGAATTGCAACATTTAGAGGTGGCAGATACGTTTACTCCTCTGCGATTTAGATCATGCGTGTAGTGTAACGTGAACTAGTATGGAGGGTTAAATAAGGTTGCGCGTGGCGACAAACCAAAATGCGCACACTATCGAAGAAAGCCACCACTCTATTCAAGCTTACCCCCAATGATGAAGTGTTTCTCGGTGTCCTTAGCCTCTCTGTGGCTTCTCCTTGCTCTCTGTTTTCTGAGAGTGGCCTAGCGCAAGCTAGCCTCCCACCAAGGGGTTGGAATTCTTACGATTCGTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAAAGTGCTGAAATAGTTTCTCAACGTCTTAAGGCTCATGGATACCAGTTTGTTGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAGGGTGCTTATCCTGATTCACTTGGATTTGACGTGATTGATGAATGGGGAAGGATGCTCCCTGATCCAGGAAGGTGGCCTTCTTCCGTAGGCGGGATGGGATTCAGTGAAGTAGCTAATAAAGTACATAGTTTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCCGTCAATGCAAACACTCCTATCCTAGATACAACCAAGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGCGTGCAAGAGACATAGCAATGCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAGAGCTTTCTTGAAATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATCTCGTGAAACATGACTGTGTGTTTGGGGATGACTTGGATTTAAGTGAAATATCCTATGTGTCGGAGGTTCTTAGAGAACTTAATCGCCCTATTGTGTATTCTCTGTCTCCCGGAACCAGTGTGACACCAGCCATGGCCAAGGACGTCAGTGGACTAGTCAACATGTATCGAATAACAGGAGATGACTGGGATAAATGGGGGGATGTCAAGGCTCATTTTGATGTAACAAGGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAATGGAAATTCGTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGCTCAAATGAAGGTCCACACAGGTTTAGTAGCCTCACTCTGGATGAGAAAAGGACACAGATGACTTTGTGGTCTTTGGCTAAGTCTCCCCTTATGTATGGTGGGGATGTGCGGAAGATTGATCCTACCACATACGAACTTATCACAAATCCTACCTTGCTAGAGATCAATTACTTCAGCTCAAATAATATGGAGGCATGTTTGACTGTCTGCAGTGAATCAAAGGCAAGTGGTTGGTCTATTGAAAGTCTTAACCAAGATCTTGAAAGAATATGTTGGAGAAAGAGTTTAGAAAACAAGCATCAGGCCCCTTTCTGTGTACACAAGAAAGAACTTAAATTCCTAGATGGGGAGAGTGTGCATCAAGTGGACTATCGAGGGAAACATCAATTAGTTGCAACTGACAGAATGAAATTTTGTTTGGATGCTTCTCCAAAACGAAAGGTTACTTCCAAAGAGTTCAAGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCAGTCTTTGTGCAACAGTAGAGTATGTTGAAGCTAATGCTAATTCTGGTGGGATCCGCTCTTGGATAGCAACAGGAAGAAAAGGGGAAATCTACCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATATGCGAAGATATCATACCTGGCTAAGGTTCTTCCTGACAAAAGCACCAGTTCATGCAAGGGCAAGGAAGTGTGGAGTGGAAGGGACGTAATAACAACGCAAGGGACGATATCAATTAGCGTGGAAATTCATGGATGTGCACTATTTGTTCTAAATTGCGACTAGTTTTGCCTCCAATTATTTAAATATTTTCTCGTTGTTGAGGCTTCCCCCTCCTCTGTTTAATTAGTATTTTTCTCTAGTTGGGGTTAGGTGAAAATTGTAAATGTTAATGCAGTTAAGTGTGGTACGTAACTGTTGGACCGCACCATGTACTACATAGCCACATAGGTAGTAATAGTTGTATGTTAGTCAGCCTCATGCTTTTCCAATTACGTGATGGTTACTTTGAAAGAACACGTTTACTTTTACTTTTTTAAATAAAATCGTGGCCTGACAGGGTAATTTATCTATCTTATCTACTATCTAGTGGTGTTGTAATGTACTTGAAAGAACATGGTCTGC 2379 0.4254 MRTLSKKATTLFKLTPNDEVFLGVLSLSVASPCSLFSESGLAQASLPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLKAHGYQFVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMLPDPGRWPSSVGGMGFSEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWRARDIAMPERACAWMPHGFMSVNTKLGAGRAFLKSLYEQYAAWGVDLVKHDCVFGDDLDLSEISYVSEVLRELNRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDKWGDVKAHFDVTRDFSTANMIGGKGLNGNSWPDLDMLPFGWLTDPGSNEGPHRFSSLTLDEKRTQMTLWSLAKSPLMYGGDVRKIDPTTYELITNPTLLEINYFSSNNMEACLTVCSESKASGWSIESLNQDLERICWRKSLENKHQAPFCVHKKELKFLDGESVHQVDYRGKHQLVATDRMKFCLDASPKRKVTSKEFKRGTFSPCRWDSNQIWELNSNGTMVNSYSSLCATVEYVEANANSGGIRSWIATGRKGEIYLAFFNLSEQKTEIYAKISYLAKVLPDKSTSSCKGKEVWSGRDVITTQGTISISVEIHGCALFVLNCD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01955 616 Gene3D - 529 615 IPR013780 -
Pste3g01955 616 SUPERFAMILY (Trans)glycosidases 44 393 IPR017853 -
Pste3g01955 616 SUPERFAMILY Glycosyl hydrolase domain 532 614 - -
Pste3g01955 616 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 38 615 IPR002241 GO:0004553|GO:0005975
Pste3g01955 616 SUPERFAMILY Ricin B-like lectins 439 543 IPR035992 -
Pste3g01955 616 Gene3D Aldolase class I 39 395 IPR013785 -
Pste3g01955 616 PRINTS Glycosyl hydrolase family 27 signature 135 156 IPR002241 GO:0004553|GO:0005975
Pste3g01955 616 PRINTS Glycosyl hydrolase family 27 signature 41 60 IPR002241 GO:0004553|GO:0005975
Pste3g01955 616 PRINTS Glycosyl hydrolase family 27 signature 350 371 IPR002241 GO:0004553|GO:0005975
Pste3g01955 616 Pfam Alpha galactosidase C-terminal beta sandwich domain 534 613 IPR041233 -
Pste3g01955 616 CDD GH27 47 392 IPR002241 GO:0004553|GO:0005975
Pste3g01955 616 Pfam Alpha galactosidase A 217 392 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01955 Pste-Chr3 13312540 13318837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01955 20 446 Glycoside Hydrolase AT3G26380 64.192 0.0 620
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01955 3 13312540 13318837 Pste3g01955 3 13312540 13318837 ECH
Pste3g01955 3 13312540 13318837 Pste7g02342 7 22075227 22077290 PCT