Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01582 GGAAAAATGTAAAATCAAACAAAATAGGGTTGATAGCGGAAGTAAGTCACTGAAAAGGGAATAGAAGAGTGGTAGGCCACTATTACGTTTCCCGCCAAGAAAATAGAGGGGGCGCGAAAATCCATTTCCCTGTGTTCTTCTTCTCTTACACTCTAAACCTAAATCTCCAAAACGGAACAGAATGAAGGGTGGCACGATTCAGATTAGCTGGCACGAGAGCAAACCCGTCTTAACCCTCGATTTCCACCCTCTCTCCGCTACTCTCGCCACTGCCGGCGCCGATTTCGACATCAAGTTCTGGTCAATAAAATCGGCGGGGACACCGAAGAAGCTTCCCGTAGTTTCCTATCTCAGTAACCTATCTTACCATAGTTCTGCTGTTAATGTTGTTCGCTTCTCTTCTTCCGGAGGGGACTTGATAATATGGAAGCTACATTCTACTGATGCTGGTCAGACATGGAAGGTTCTGAAGATGTTACGATCTCATCACAAGGACATTCTGGACCTGCAGTGGTCTACTGATGCCACGTACATCATATCTGGATCTGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATGCCCATGCACACTATGTTCAAGGGGTTGCATGGGATCCTCTTGGGAAATATGTTACTTCTCTTAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTCATAAATCGAAGGGCATTGAGAAAATCAATTATGTTTGCCAGCAAGTCATTTCCAAGGCAGATAAGCCATTATTAAAGAATTCTAAGGATACAAAATTTCATCTGTTCCACGATGAGACGTTACCATCTTTTTTCAGAAGACTAGCATGGTCTCCTGATGGTTCGTTTCTACTTGTGCCTGCAGGATCTTACAAAATTAATACTGCATCTGAATCTGTGAATGCGGCTTACATATTCTCTAGAAAAGATCTTTCCAGGCCTGCTATACAGCTTCCCTCTGCAAGCAAAGCTGTTGTAGTTGTCCGGTTCTGTCCCATATTTTTTAAACTTCGGGGAAAGAGCTCACTTAACTCAGAATTTACTGCTCAGCAGACGCCTAATACTGATTTGGTTAGCGCAGCTGGGTTGTTTAAGCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCGTTGTACATTTATGACACTGAGTGCACCTCTCCGATAGCTGTATTAGCTGGTCTTCACTATTCCGCAATAACAGATATTGCCTGGTCATCTGATGCTCACTATTTGGCATTGTCGTCACAAGATGGTTTTTGCTCTTTGGTGGAATTTGAAAATGGCGAACTTGGATCACCTTATTCTCTATCAGAAGGAAAGGTCCCAAACAGTGATAGTATGAGCAACGTGCAAATAGTCAATGACACTGTCACTGTACCAACTGGGAATGTTAGTGTTGTTCTAGACGAGAGCAAGAAAATGGAATCAGAAAATAAGGCTGATGACACGGTCATTGAAGCTTTTGGGAATACTGGTGCTGTTGTAATAGAAAGTGAGAAAACTGCGACGGAAGAGAAGGCTGACATGATCAATTCAACAGGGAATTTAGCTTATTTTAGGAAAAACAAAGCAGAAGAGGAAGCTGTTGACATGGTAATCGAGGCAACCTGGAATGAAGGGATTATGGCAGATAGTGGAAAAAATGAAGAGAAAACTGATGACATGGTCATAGAAACTACTGGAAGTATTGGTGGTACTGAATTAAATAGTAGAAAAGCTGAACCAGAAGATAAAGCAGAGAAACAGCTACAGAATTCAGGTATTGTAAATTTTGGAGCACAAGGCAAGGCAGAGGAACAACCAGCTAATCCAGATCCAGATGGTAAACAAAGGGAGGCAAAAGAGAAGACAGAGAAACAGCAGTCAAGTTTAGATGGTATAAAATCTGAACTTGAAGAAAAGGCAAGGCAACAATTGTCCAGTTCAAAGAGTACACCCATATCAAATAAGCCAACCAAGAAGCGTATTACTCCCATTGCCATTGATCCATGATTTTTCAAATTCAGAGAAATTCCATCCATGCCTGCCTGTACACATCTTTTGTGCGCCATTTATTTGGCAGTCATATTTTCCTCTTTATTTTTCTCATATTTTTCAATCACATATTCTGTAATATAGATTCCAA 2162 0.4126 MKGGTIQISWHESKPVLTLDFHPLSATLATAGADFDIKFWSIKSAGTPKKLPVVSYLSNLSYHSSAVNVVRFSSSGGDLIIWKLHSTDAGQTWKVLKMLRSHHKDILDLQWSTDATYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVTSLSSDRTCRIYMNKPHKSKGIEKINYVCQQVISKADKPLLKNSKDTKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKINTASESVNAAYIFSRKDLSRPAIQLPSASKAVVVVRFCPIFFKLRGKSSLNSEFTAQQTPNTDLVSAAGLFKLPYRIIFAVATLNSLYIYDTECTSPIAVLAGLHYSAITDIAWSSDAHYLALSSQDGFCSLVEFENGELGSPYSLSEGKVPNSDSMSNVQIVNDTVTVPTGNVSVVLDESKKMESENKADDTVIEAFGNTGAVVIESEKTATEEKADMINSTGNLAYFRKNKAEEEAVDMVIEATWNEGIMADSGKNEEKTDDMVIETTGSIGGTELNSRKAEPEDKAEKQLQNSGIVNFGAQGKAEEQPANPDPDGKQREAKEKTEKQQSSLDGIKSELEEKARQQLSSSKSTPISNKPTKKRITPIAIDP 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01582 615 Pfam WD domain, G-beta repeat 94 131 IPR001680 GO:0005515
Pste3g01582 615 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Pste3g01582 615 Pfam WD domain, G-beta repeat 135 172 IPR001680 GO:0005515
Pste3g01582 615 FunFam Chromatin assembly factor 1 subunit FAS2 4 241 - -
Pste3g01582 615 MobiDBLite consensus disorder prediction 554 589 - -
Pste3g01582 615 ProSitePatterns Trp-Asp (WD) repeats signature. 118 132 IPR019775 -
Pste3g01582 615 MobiDBLite consensus disorder prediction 511 615 - -
Pste3g01582 615 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 615 IPR045145 GO:0006335
Pste3g01582 615 Gene3D - 78 215 IPR015943 GO:0005515
Pste3g01582 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 140 IPR001680 GO:0005515
Pste3g01582 615 Gene3D - 4 77 IPR015943 GO:0005515
Pste3g01582 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Pste3g01582 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 172 IPR001680 GO:0005515
Pste3g01582 615 Gene3D - 218 440 IPR015943 GO:0005515
Pste3g01582 615 SMART WD40_4 134 173 IPR001680 GO:0005515
Pste3g01582 615 SMART WD40_4 53 83 IPR001680 GO:0005515
Pste3g01582 615 SMART WD40_4 2 41 IPR001680 GO:0005515
Pste3g01582 615 SMART WD40_4 92 131 IPR001680 GO:0005515
Pste3g01582 615 SMART WD40_4 336 376 IPR001680 GO:0005515
Pste3g01582 615 MobiDBLite consensus disorder prediction 590 604 - -
Pste3g01582 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 135 - -
Pste3g01582 615 SUPERFAMILY WD40 repeat-like 13 398 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01582 25 172 Miscellaneous Gene Families AT5G08390 24.204 1.46e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01582 3 9925960 9935137 Pste3g01582 3 9925960 9935137 ECH