Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01176 GCTCTAGCTTGGAAAGTGCTGATTTGAGTGATTTCAATCTCGTAAGAAAATCAAAATTCTCACATAGCAATGAACAAGCTACTTAATTTTGCATTGCCCCCATTGTCACTAATTCTGATCTCCATCCTCACTCTACCATTGCTGTTATTCAAGCCTCTAATGTACATCAGAAAGTTAGTATTCAAAGAAAACGTGGCAAAGAAAGTAATATTAATAACCGGAGCAGCCTCAGGGATTGGCGAGCAAGTAGCTTACGAATATGCTAGGCGAGGAGCAAAGCTGTCGCTGGTTGACATCAGAAAGGAGAATCTTGTAACAGTGGCAGATAAGGCTCGGTCTCTGGGTTCCCCTGATGTTATCATCATTGGCGCTGACGTATCCAAGGTCCAAGACTGTAAACGCTTTGTTGATGAAACGGTGAACTTCTTTGGAAGACTGGATCATCTCGTAAATAATGCGGGAATTTCTGGTAAGCCTGTGAAGGTGGAGTATTTGCGTGATGTTTCAGAATTAAGTCCCGTTATGGACATAAATTTCTGGGGAGCGGTTTACGGGACTTTATATGCAATCCCACATCTCAAAATCAACAAAGGAAGGATCATAGTGATTGCTTCAGGTTGCGGATGGTTCCCTCTACCACGTATAAGCATCTACAATGCGAGCAAGGCAGCGGTAATAAACTTCTTTGAGACCCTGAGAATGGAACTTGGTTGGGCTATTGGCATAACAATTGCCATGCCCGGTTTGATCAAGACGAACCTTACTTTGAAGGCCATTAAATCTGAGCCTGCGATGGGAAGAATTCCAATGGGATCAGCAGATGAATGTGCTAAAGACATAGTGGAAAGTGCATGCAGGGGAGACATGTACGTTACAAATCCGTCGTGGGTCAGAGTTTTGTTTCCTTGGAAGCTGCTTTTTCCTCAACTCATAGAGTGGGCCACTAACTTGCTCCTAGAGCTTTCTCAAGACTCGTCCACCATGAAAACCAATTAATATGCACTTGTCCATGATCCCACACCTTAAGGCAGAATAAAATGTAACTACGCTTCCATTGTTCATCTGGTGACCTAGTCAGCC 1080 0.4352 MNKLLNFALPPLSLILISILTLPLLLFKPLMYIRKLVFKENVAKKVILITGAASGIGEQVAYEYARRGAKLSLVDIRKENLVTVADKARSLGSPDVIIIGADVSKVQDCKRFVDETVNFFGRLDHLVNNAGISGKPVKVEYLRDVSELSPVMDINFWGAVYGTLYAIPHLKINKGRIIVIASGCGWFPLPRISIYNASKAAVINFFETLRMELGWAIGITIAMPGLIKTNLTLKAIKSEPAMGRIPMGSADECAKDIVESACRGDMYVTNPSWVRVLFPWKLLFPQLIEWATNLLLELSQDSSTMKTN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01176 308 PANTHER RETINOL DEHYDROGENASE-RELATED 43 292 - -
Pste3g01176 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 121 132 IPR002347 -
Pste3g01176 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 195 214 IPR002347 -
Pste3g01176 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 183 IPR002347 -
Pste3g01176 308 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
Pste3g01176 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 292 IPR036291 -
Pste3g01176 308 PRINTS Glucose/ribitol dehydrogenase family signature 46 63 IPR002347 -
Pste3g01176 308 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Pste3g01176 308 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Pste3g01176 308 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Pste3g01176 308 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Pste3g01176 308 Gene3D - 32 302 - -
Pste3g01176 308 Pfam short chain dehydrogenase 45 235 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01176 Pste-Chr3 7487757 7499502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01176 40 254 Acyl Lipid Metabolism Gene Families AT1G24360 29.911 2.96e-14 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01176 3 7487757 7499502 Pste3g01176 3 7487757 7499502 ECH