Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00332 GTTGTTGTTGTGGACCTTGAGTATAATCAAATCACTACCTCAGAGGAAATTCCTCCTATTCCTGAGCCAGAATTCAGTCTTTTACGTGGTGAGATAATGAAGCTATTATATCCCAATGTAATTGGAATTGATGAGATGAAGGCTGGAATATACAGCATATCTGAGCATTATCCTAAACTTAGGGCTAAGCAATGGGGAGAGGAACATGATCTTCAGCTAAGGATGATATTCCTAAAGTTCTTTGCTACAGTTTTAAGTGGCTATCGCAATTTCCTAGAAAATAGTGCTACTCAAGTCTTCAACACTCAAGCTTTTTTGAAGAAGCGGTCTCGATCCACTAACCAACCACCAGAGCCCATGATAGCCCAGTTCCTCGACTCTCATGGTTTCTTGGATTATTTGGAAAGAGGAGTAGGTTCTGATGAAAACAACAATAATCTGCTTGATAAGCTACAAGATGCAATTGGAAGGGGCCAAAATCCTATGTCAATTCTTCCTTCATCCACAGTAGAACCTGAGATTTTAACAGTATCAGATTCTGATGCTGGAATATCAGGATCTGGTGCCAAATACACCTATGATAGATTTCCTGCAAGTATCAGAACAGAAGAACAAGAGGAAAAGAGGAAACAGATTCTTGCAGCAGTTAGTAATGCTTTTGAGTACTCAGGAAGACATGCTCCAAGTAAGGATCCTTTAGCAGACACGCTTAGTCCTCTTGAGAGAGCTGCTGAAAGGGAGCGCATGGTGCTAGATATTAAGGTTAAGCTGCAGGGTTTATGGCTCCGGCTTCTTAAACTGGGAGCAACTGATGATCCTCTCTCATCCTTTGAATACGGAACAATACTTGCTTTGATTGAATCTGATGCAGAGGGAATTGGCGGTAGCGGATTTGTTGAATGTATAAGGGAGCATATTCATTCGGGTTGGGACTGTCATCTCACTGAAGAACAGTTTATTGCAGTGAAAGAATTGCTTAAAACAGCTATCAATCGTGCAACATCTCGGAATGACTTGTTGACCATTAGAGATGCTCTTGAAGTTTCTTCTGATATGTATAAGAAAGATAATAACAATGTGCCTGACTATGTCCAGCGTCATCTTATCTCTTTATCTATTTGGGAGGAATTACGATTTTGGGAAGGATATTTTGACTATTTGATGGAGCAATCTTCAAACAAGTCTGCGAACTATGCATCTTTGGTGACTGCTCAGCTTGTTGTGCTGGCTGGGCTGGGACTTCCTGATAATGATGCTTGGTACATGATCGAAACAATTGCAGAGAGGAACAGCATTGGATCAAAGCAATTTATAAAAATCAGAGGGTTCTTGTCTCATATCGAGCAATTACGGAATGGATACTGGGGAATCACCTCAATGAAGGCACAGTCTGTGTTACTTTCATTGCCATCACCGCATTCTAAAGATGCCAAGGATGAGAACCAGCAACCCACTGAGGCAACTGGTGTTGGTAGAAGTTGGGTGCAAAGTATGTTCACCCGAAATACAACAACTAGATCCAGCTCATTTAGTCGTGTTCGTAGATGGACATCTGATGGAAGCAACTCAGCTACGAATGAGAATGGGACTCCTCGCAAACAAGATCTGTCAAGTGGTGGCCAGAAAAAGCTTCAAACCAATGTTCGCATACTTCGGGGTCATAATGGTGCCGTTACTGCTATCCATTGTGTTACAAAAAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAAGATGCTGGTTTCTTCATTAGTGGAAGCACGGACTGCTCTGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACCAGAACTGTTCGTGCCATAAGTTCAGACAGGGGGAAGGTGGTGTCAGGATCTGATGATCAGTCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTTCTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGCTGTGTGCGCATGCTCTCAGGTGAACGTGTGTTAACTGCATCACATGATGGGACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTCTATGCATGGAATATGATGACAATGTGGGTGTCTTGGCAGCTGCTGGAAGAGATGTGGTTGCTAACATATGGGATATCCGTGCTAGTAGGCAGATGCATAAACTTTCAGGACATAGGCAATGGATACGGTCCATAAGAATGGTTGGTGACACTGTGATTACTGGTAGTGATGATTGGACAGCCAGAATATGGTCTGTTTCCCGAGGAACATGTGATGCTGTCCTAGCATGCCATGCAGGGCCAATATTATGTGTTGAATATTCTTCTTTAGACAGAGGAATAATTACAGGTTCCACTGATGGCCTGCTACGTTTTTGGGAAAATGATGATGGAGGTATACGGTGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCTATCAATGCTGGGGAGCACTGGTTAGGCATTGGAGCAGCTGATAATTCTCTGTCACTCTTTCACCGGCCCCAAGAAAGACTTGGTGGTTTTTCTGGTCCTGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACGCCTCAAAAAACAGTTGCTATGGTAAGATGTGTTACTTCAGACTTGGAAAGGAAAAGGATATGCACCGGTGGTCGCAATGGGCTTCTAAGGCTGGTGAAAAGCAAGGAACTAATGAGGGATTTTTTTCTCCAATATATTTTGTTTAGTTCCCTTGTAGTATATAATATGCAAGATATCTCCATTGATTCCAAGTTGTGCACACTTGTAATTTTGTGGTTAGAGGCTTCTGTATCCTGA 2841 0.4277 VVVVDLEYNQITTSEEIPPIPEPEFSLLRGEIMKLLYPNVIGIDEMKAGIYSISEHYPKLRAKQWGEEHDLQLRMIFLKFFATVLSGYRNFLENSATQVFNTQAFLKKRSRSTNQPPEPMIAQFLDSHGFLDYLERGVGSDENNNNLLDKLQDAIGRGQNPMSILPSSTVEPEILTVSDSDAGISGSGAKYTYDRFPASIRTEEQEEKRKQILAAVSNAFEYSGRHAPSKDPLADTLSPLERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWDCHLTEEQFIAVKELLKTAINRATSRNDLLTIRDALEVSSDMYKKDNNNVPDYVQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYASLVTAQLVVLAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIEQLRNGYWGITSMKAQSVLLSLPSPHSKDAKDENQQPTEATGVGRSWVQSMFTRNTTTRSSSFSRVRRWTSDGSNSATNENGTPRKQDLSSGGQKKLQTNVRILRGHNGAVTAIHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTVRAISSDRGKVVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRMLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAAGRDVVANIWDIRASRQMHKLSGHRQWIRSIRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTIHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGGFSGPGSKMAGWQLYRTPQKTVAMVRCVTSDLERKRICTGGRNGLLRLVKSKELMRDFFLQYILFSSLVVYNMQDISIDSKLCTLVILWLEASVS 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 647 681 - -
Pste3g00332 946 MobiDBLite consensus disorder prediction 470 542 - -
Pste3g00332 946 FunFam DENN domain and WD repeat-containing protein SCD1 507 728 - -
Pste3g00332 946 SUPERFAMILY WD40 repeat-like 548 899 IPR036322 GO:0005515
Pste3g00332 946 Gene3D - 507 722 IPR015943 GO:0005515
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 730 769 IPR001680 GO:0005515
Pste3g00332 946 ProSiteProfiles Tripartite DENN domain profile. 1 145 IPR037516 -
Pste3g00332 946 FunFam DENN domain and WD repeat-containing protein SCD1 729 904 - -
Pste3g00332 946 CDD WD40 547 843 - -
Pste3g00332 946 PRINTS G protein beta WD-40 repeat signature 747 761 IPR020472 -
Pste3g00332 946 PRINTS G protein beta WD-40 repeat signature 624 638 IPR020472 -
Pste3g00332 946 PRINTS G protein beta WD-40 repeat signature 665 679 IPR020472 -
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 637 - -
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 647 687 IPR001680 GO:0005515
Pste3g00332 946 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 1 904 - -
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 770 802 - -
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 595 IPR001680 GO:0005515
Pste3g00332 946 MobiDBLite consensus disorder prediction 483 542 - -
Pste3g00332 946 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Pste3g00332 946 SMART WD40_4 681 720 IPR001680 GO:0005515
Pste3g00332 946 SMART WD40_4 807 844 IPR001680 GO:0005515
Pste3g00332 946 SMART WD40_4 600 637 IPR001680 GO:0005515
Pste3g00332 946 SMART WD40_4 862 901 IPR001680 GO:0005515
Pste3g00332 946 SMART WD40_4 763 802 IPR001680 GO:0005515
Pste3g00332 946 SMART WD40_4 544 595 IPR001680 GO:0005515
Pste3g00332 946 SMART WD40_4 640 678 IPR001680 GO:0005515
Pste3g00332 946 SMART WD40_4 723 760 IPR001680 GO:0005515
Pste3g00332 946 Gene3D - 725 910 IPR015943 GO:0005515
Pste3g00332 946 Pfam WD domain, G-beta repeat 605 637 IPR001680 GO:0005515
Pste3g00332 946 Pfam WD domain, G-beta repeat 765 801 IPR001680 GO:0005515
Pste3g00332 946 Pfam WD domain, G-beta repeat 726 760 IPR001680 GO:0005515
Pste3g00332 946 Pfam WD domain, G-beta repeat 642 678 IPR001680 GO:0005515
Pste3g00332 946 Pfam WD domain, G-beta repeat 546 595 IPR001680 GO:0005515
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 646 IPR001680 GO:0005515
Pste3g00332 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 770 802 IPR001680 GO:0005515
Pste3g00332 946 SMART dDENN_cls 69 137 IPR005112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00332 Pste-Chr3 1642777 1665234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00332 542 853 Acyl Lipid Metabolism Gene Families AT3G18860 26.984 6.17e-16 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00332 3 1642777 1665234 Pste3g00332 3 1642777 1665234 ECH