LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03192	GAGGAAGCAGAGCTAGCACGCAGTTTGTGTTCTATGTTTCTCTGAGTTCCAAGTGGACTCAATAGCGGAGCAATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACGATGGTGTTAGCTGAGTACACGGAGTTCACTGGAAACTTCCCTGCCATTGCAGCTCAGTGTCTCCAGAAGCTTCCCTCTTCCAACAACAAGTTCACTTATAACTGTGATCACCACACCTTTAATTTCTTAGTTGAAGATGGCTATGCTTACTGTGTTGTTGCCAAGGAATCTATTAGCAAGCAGATCTCTATTGCTTTCCTTGAACGTGTCAAAGCAGACTTTAAGAAAAGATATGGCGGTGGAAAAGCAGATACAGCTATTGGCAAGAGTCTGAACAAGGAGTTTGGACCAGTTATGAAAGATCACATGAAATATATCATCGATCATGCTGAAGAGATTGTAAAGCTAATAAAAGTGAAGGCTCGAGTTTTAGAAGTTAAGAGTATCATGTTAGAAAATATAAACAAGGCTATTGATAAAGGAGAGAATCTAACTATTTTTGCAGATAAGACGAAGACATTGCGTTCACAAGCTCAAGATTTCAGAAAACAAAGAATACAAGTCCATAGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTGTGGGGATATTATTGTTTTTGGTCTTGGTTATCTGGCTTTCTATTTGTGGTGGATTAAACTGTACAAACTAGCAGTGATTGAAAGTTTCCATATAGGTTTTTAAAATTATGTATAAGTGGACAATTTAGCAAGAAAATCAACTGAGAAGAGGTAGTTTGGCAATTGGAAAAAAATTCCTACCTTCTTTGGTGGTTGATATGTTCTTGGAAATTCTTCAATAGAGGGAGAGAGGAATTTATGTGTAGCTGTGTAGCATGTGATAGTCTGTTTGATCTGCAAACAATACTGTTGTAATATTTTTCCTTTCAAT	977	0.3756	MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESISKQISIAFLERVKADFKKRYGGGKADTAIGKSLNKEFGPVMKDHMKYIIDHAEEIVKLIKVKARVLEVKSIMLENINKAIDKGENLTIFADKTKTLRSQAQDFRKQRIQVHRKMWYQNMKIKLVVVGILLFLVLVIWLSICGGLNCTN	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g03192	221	Gene3D	-	118	214	-	-
	Pste2g03192	221	Gene3D	Longin domain	6	117	-	-
	Pste2g03192	221	SUPERFAMILY	SNARE-like	6	121	IPR011012	-
	Pste2g03192	221	PANTHER	SNARE PROTEINS	3	215	-	-
	Pste2g03192	221	FunFam	Vesicle-associated membrane protein 724	1	126	-	-
	Pste2g03192	221	Pfam	Regulated-SNARE-like domain	32	101	IPR010908	-
	Pste2g03192	221	SUPERFAMILY	SNARE fusion complex	129	192	-	-
	Pste2g03192	221	ProSiteProfiles	Longin domain profile.	10	114	IPR010908	-
	Pste2g03192	221	ProSiteProfiles	v-SNARE coiled-coil homology domain profile.	130	190	IPR042855	-
	Pste2g03192	221	PRINTS	Synaptobrevin signature	155	174	IPR001388	GO:0016020\|GO:0016192
	Pste2g03192	221	PRINTS	Synaptobrevin signature	135	154	IPR001388	GO:0016020\|GO:0016192
	Pste2g03192	221	PRINTS	Synaptobrevin signature	191	210	IPR001388	GO:0016020\|GO:0016192
	Pste2g03192	221	CDD	Longin	7	120	IPR010908	-
	Pste2g03192	221	CDD	R-SNARE	130	188	-	-
	Pste2g03192	221	SMART	Longin_2	31	113	IPR010908	-
	Pste2g03192	221	Pfam	Synaptobrevin	130	215	IPR042855	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03192	Pste-Chr2	31787418	31790051	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03192	1	220	Miscellaneous Gene Families	AT1G04760	65.000	3.89e-105	300

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g03192	2	31787418	31790051	Pste2g03192	2	31787418	31790051	ECH
	Pste6g04137	6	30672529	30675085	Pste2g03192	2	31787418	31790051	PCT