Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03063 AATATGGCTTTGCAGAAGTATGCTCCTTCTGGCAATGCACCTTCTGTTAATATGAAATATTTGAACTTTTCCAGTAAGGTGCCTAAGAAGGCTGAGCTTTATGAGGCAAATCAGAATCATAATATGGATGTGGATATTGACCTTAGGGAAATTTATTTTCTCATTATGCACTTTCTTTCTGCTGGTCCATGTCATAAAACTTATTTACAGTTTTGGAATGAGCTTCTTGAGCATCAACTTTTGCCTAGAAGGTATCATGCTTGGTATTCAAGGAGTGGGGTATGTAGTGGAGACAAAGATGATGATGGTCTATCATTCCCTATAAATTACAATATGTTAGTGGAAAGGTATCCTCATATTGAAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTATTAAATACAGCCTCCCCATCACTGGGTATGAATCTTGGAAATGCTCCAAATGCAGCTGATGTACCCACTCTTCTAGGAAGCGATGATAGGGATAAAATGAAAGAAGTCAGACGACCACCTCCGCACATGCGTTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTTAATTTGAGGGAAATTGGGGGTGGTTTCCCAAGACACCATCGTGCACCATCTATTCGTGCTGCATGCTATGCCATCGCAAAACCTTCTACCATGGTGCAAAAGATGCAAAATATCAAGAGGTTAAGAGGACACCGCAACGCTGTTTATTGTGCTATATTTGATCGGTCAGGAAGATATGTTATTACAGGTTCAGATGATCGACTTGTAAAAATTTGGTCAATGGAAACTGCATATTGTTTAGCCAGTTGCCGTGGACATGACGGTGACATTACTGACTTGGCTGTGAGTTCAAACAATGCTTTAGTAGCATCCTCATCAAATGACTGTGTTATTCGAGTTTGGCGGTTGCCAGATGGTTTGCCAATATCAGTTTTGCGGGGTCATACTGGAGCTGTTACGGCTATCGCATTTAGTCCCAGACCGAATGCTGTATACCAGCTTTTATCTTCCTCTGACGATGGAACTTGTAGGATATGGGATGCAAGGTATACCCAGTCAAGTCCAAGATTATATGTTCCAAGGCCTTCTGAGTCTGTATTTGGGAAGAGCAGTGGCCCATCTTCTAGTACTTTACCACAGAGCCATCAGATTTTTTGCTGTACATTTAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGACAATCGTGCGAGGGTATGGAATGCTTGTAAACTTAGTATGGAGGACACTGATCAACCAAATCATGAGATAGATGTACTATCTGGGCATGAAAATGATGTGAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCTCGGTTTTCCATCGCAGAAACTTGGAAGGAGGAAAATATTCCCAAATTTAAAAATTCCTGGTTGAATCATGACAACATAGTTACCTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCTAAATCACGCAGGTCACATGGAAAAGGTGGTCGCTGGACACGAGCATATCATCTAAGAGTTCCACCTCCACCTATGCCTCCTCAACCGCAGAGAGGTGGTCCTCGTCAGAGAATTCTCCCAACTCCACGCGGTGTAAATATGATTGTTTGGAGCCTTGACAATCGCTTTGTCCTCGCAGCTATTATGGATACTCTTGCAGATTGTAGAATTTGTGTTTGGAACGCATCTGATGGCAGCTTAGTACACTCATTGACTGGGCATACTGAATCTGTAAGTGTGTTATTTATTGGTTTTGGTTTATCTTCCTACTTCACTCAAACGCATTACATCCAATGCTGA 1806 0.4175 NMALQKYAPSGNAPSVNMKYLNFSSKVPKKAELYEANQNHNMDVDIDLREIYFLIMHFLSAGPCHKTYLQFWNELLEHQLLPRRYHAWYSRSGVCSGDKDDDGLSFPINYNMLVERYPHIEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSDDRDKMKEVRRPPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARYTQSSPRLYVPRPSESVFGKSSGPSSSTLPQSHQIFCCTFNANGTVFVTGSSDNRARVWNACKLSMEDTDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSIAETWKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKGGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDTLADCRICVWNASDGSLVHSLTGHTESVSVLFIGFGLSSYFTQTHYIQC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03063 601 SMART WD40_4 307 349 IPR001680 GO:0005515
Pste2g03063 601 SMART WD40_4 521 563 IPR001680 GO:0005515
Pste2g03063 601 SMART WD40_4 373 411 IPR001680 GO:0005515
Pste2g03063 601 SMART WD40_4 423 488 IPR001680 GO:0005515
Pste2g03063 601 SMART WD40_4 265 304 IPR001680 GO:0005515
Pste2g03063 601 SMART WD40_4 223 262 IPR001680 GO:0005515
Pste2g03063 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 411 IPR001680 GO:0005515
Pste2g03063 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 349 - -
Pste2g03063 601 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Pste2g03063 601 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Pste2g03063 601 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Pste2g03063 601 Pfam WD domain, G-beta repeat 310 349 IPR001680 GO:0005515
Pste2g03063 601 Pfam WD domain, G-beta repeat 383 411 IPR001680 GO:0005515
Pste2g03063 601 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Pste2g03063 601 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Pste2g03063 601 SUPERFAMILY WD40 repeat-like 221 583 IPR036322 GO:0005515
Pste2g03063 601 Gene3D - 518 592 IPR015943 GO:0005515
Pste2g03063 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 265 - -
Pste2g03063 601 Gene3D - 212 378 IPR015943 GO:0005515
Pste2g03063 601 FunFam PH-interacting protein isoform X1 205 374 - -
Pste2g03063 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 305 - -
Pste2g03063 601 PANTHER WD REPEAT DOMAIN 9 38 583 - -
Pste2g03063 601 CDD WD40 226 583 - -
Pste2g03063 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 358 IPR001680 GO:0005515
Pste2g03063 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Pste2g03063 601 Gene3D - 379 514 IPR015943 GO:0005515
Pste2g03063 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Pste2g03063 601 FunFam Bromodomain and WD repeat domain-containing protein 376 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03063 Pste-Chr2 30609671 30626330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03063 221 411 Miscellaneous Gene Families AT5G08390 22.396 1.25e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03063 2 30609671 30626330 Pste2g03063 2 30609671 30626330 ECH