Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03026 ATGCATTTGTTTGTTGGCAGATCTATCTGTTTCTTCACCATGGCCACTGGACAACTATTCTCCCGTACTACACAGGCTTTATTTTACAACTACAAGCAACTTCCCATCCAGCGGATGCTTGATTTTGATTTCCTTTGCGGCAGGGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTTCTGAGGGATTTCAAAAACTGTTTTTCGGTCAGGAGGAAATTGCCATCCCTGTTCATGCTACCATTGAAGCAGCATGTGCTGCACATCCTACTGCCGATGTCTTCATCAACTTTGCTTCATTCAGAAGTGCTGCAGCATCATCCATGTCTGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTACCTGAGTCAGACACTAAGCAATTGATTGCATATGCCCGGGCAAATAATAAGGTTGTGATTGGTCCAGCCACTGTTGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGTGACACTGCTGGAACCATTGACAATATAATTCACTGCAAGCTCTACAGACCTGGATCTATTGGATTTGTTTCTAAATCTGTATGTAGTTATTTACTTCTTCCTTATGTTGATGTTATCTTCTTCTTATTGAGGGGTGGAATGTCCAATGAATTATACAACAGTATTGCCCGTGTAACTGATGGGATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTCCCTGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCACAAGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGAAGCCCTCAAACAAGGGAAAGTATCAAAACCAGTTGTTGCCTGGGTTAGTGGGACATGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCTAAAAGTGGTGGTGAGTTGGAATCTGCACAAGCGAAGAATCAGGCACTAAGGGATGCTGGAGCTGTTGTCCCCACATCATATGAAGCTTTCGAAGCTTCAATTAAAGAAACATTTGACAAATTGGTCGAAGAAGGGAAGATAACCCCAGTCAAGGAAATCACTCCTCCACCAATCCCTGAGGACCTTAGCACTGCAATTAGGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACAATTTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGGGTACCCATGTCTTCCATTATTGAAAAAGGTTATGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGCAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGCATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGATCTAGTTTCCAGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTCACGCCATATGAGTTTGTTGAAGGTATGAAGAAGAAAGGAATTCGTGTGCCAGGCATAGGGCACAGGATCAAGAACAGGGACAATAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGAACGCATTTTCCTTCTGTGAAATACATGGAATATGCTGTTACAGTCGAAACCTACACCCTCACAAAGGCAAATAATTTAGTTCTTAACGTAGATGGTGCGATTGGATCCCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATCGTAGAGATTGGTTATCTGAATGGTCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGGCACACCTTTGATCAAAAGCGTTTGAAGCAGCCACTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGAGTGTCGTGTAAGTGAGAACAAATTAGCAATCTTTTGAGAAATCATGCATCTGAAATACGCTGGAGTGATTTTGTAGCTGTTAGACTAGTGTTGTACGATCAATTGGTGAGAAGTCATCTTCCATTTGTAACTTGTATCAAGTTTCATAAAGAAAGAACTTGTTCATTTTTAAAATTATATATTTCTCTTGATGAATAATATGATCTCTGTAGTCATAGGAAATAATCACAAAAGTTCAAGCACATTTATTTTGCAATATGGTATATGTTCATGGGAACAACAATTTTATTGCTCAGAGTATGGAATGTTTTTTATAAGCCAAGAATACGTTGGTGGCCTATTGTCATGCG 2270 0.4172 MHLFVGRSICFFTMATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHATIEAACAAHPTADVFINFASFRSAAASSMSALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSIGFVSKSVCSYLLLPYVDVIFFLLRGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALRDAGAVVPTSYEAFEASIKETFDKLVEEGKITPVKEITPPPIPEDLSTAIRSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVEGMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVTVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03026 639 Gene3D - 482 583 IPR016143 -
Pste2g03026 639 FunFam ATP-citrate synthase subunit 1 486 579 - -
Pste2g03026 639 Gene3D - 15 150 - -
Pste2g03026 639 Gene3D - 151 354 IPR016102 -
Pste2g03026 639 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 290 306 IPR017440 -
Pste2g03026 639 FunFam ATP-citrate synthase subunit 151 354 - -
Pste2g03026 639 Pfam CoA-ligase 220 329 IPR005811 GO:0003824
Pste2g03026 639 Pfam Citrate synthase, C-terminal domain 430 629 IPR002020 GO:0006099|GO:0046912
Pste2g03026 639 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 149 IPR036291 -
Pste2g03026 639 PANTHER ATP-CITRATE SYNTHASE 16 638 IPR002020 GO:0006099|GO:0046912
Pste2g03026 639 Gene3D Citrate Synthase, domain 1 431 629 IPR016142 -
Pste2g03026 639 FunFam ATP-citrate synthase beta chain protein 15 150 - -
Pste2g03026 639 SUPERFAMILY Citrate synthase 210 636 IPR036969 GO:0046912
Pste2g03026 639 CDD CCL_ACL-C 400 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03026 Pste-Chr2 30248822 30254070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03026 14 639 Acyl Lipid Metabolism Gene Families AT5G49460 90.735 0.0 1136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03026 2 30248822 30254070 Pste2g03026 2 30248822 30254070 ECH
Pste6g03992 6 29218646 29224192 Pste2g03026 2 30248822 30254070 PCT