Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02827 CCTTGGGGCACCAGCCACGTGGTGGAACCACCTATCGCCAGGCTTCGTGAACTTTCCTCTCAGCCAGACACGTGGATTCCAACTGCGAAGAAATCCAACCCAAGGGTTGACGAGAGTTTAGAATCAAACGGCAGAAGCAGAAAAAGTAATGGGCGGTTAAATGGAGCCCACACCCTAGCCCACGGATTCCACTTCCTCTTAATACGGGTCCCACCCTGTTCCTTCAATTCTCAACCTTCTTCATCACTTCCTTGCTCCCTCTATAAGTACGTCACCCCCCATCCTCTGCCTCTGCCTCTGCCTCATTTCTTTATTCGCATCTCAATCCTCAAACACATGGAGCACTTCAACAACGATGATCTCGATTACGTCCTCGACGATGACTACGACTTCGACACCACCTCCGACATTGTTCCTCAACCAATGTCCGATGTCGACTCTCAGGACTCCGATTTCGAAGACGATTTCCAAACGAGTAATGCCAATGCCAAGACTGATACCACTGCTTTGGAAGCCAGAAACGGGAAAGATATCCAGGGAATCCCGTGGGAGAGGCTTAATTATAGCAGAGAAAAATACCGCGAGACTAGACTCAAGCAGTACAAAAACTACGAGAACCTCTCTCGTTCTCGTCACCACCTCCACAAGGAGTGTTTGAAAGTGCAGAAGGGGAAAACCTTCTATGACTTCCACTTCAATACCAGGCTTGTTAAATCCACAATTGTGCATTTTCAGGTAGAGATTTTGTTTATCGCTGCTTATTACGTAGATTCCCCAACATTTGGGTCATTCATTTACGATATCATAAATGGGTTATTTGCTTCAATACGTGCAGGGAGTTCATACCTGGCTGAGAACAAGACCGTTTCATGCCAATTTATGGATATGGATGCGTCAAGGCTATGGTGGAGAGTGAGCAGCTTGGCAGGACCTTATATTATGCTGAGGAATTTGTTGTGGGCAACTACGAAGCATGATGTATACCTTATGCAAAACTACTCAGTAATGCACTGGTCTGCATTACTCCGAAGGGGTAAAGAAGTGCTTAATGTAGCCAAACCAATTACTCCAACCCTTAAGCGTCCTGGATGTTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGTTGGTGGCAGGTGGTTTCCAGGGAGAGCTTATATGCAAGCATTTGAAACATCCCGAAGTTCTAATCTGCGGTAAAATAACTACAGGAGATAATGCCATCACCAATGCTGTGGATGTTTACCGCAATCAAGTTGGGTCGTTGAGGGTCATCACAGCAAATAATGATTCCCAAGTACGGGTTTTTGATGCACAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAATACTTCTGTTAGTCCGGATGGTAAGCTGTTAGCTGTTCTCGGGGACAGCACCGAGTGCTTGATAGCTGATGCTAACACCGGAAAGGTTACTGGGAGCCTAAAAGGGCATTTGGACTACTCTTTCGCATCGGCTTGGCACCCAGATGGACGGATTTTGGCCACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAATCTATGGCTGTATTAAAGGGAAAAATGGGTGCAATAAGGGCCTTAAGATTCACATCTGATGGACGGTTTTTGGCCATGGCTGAGCCAGCAGACTTTGTCCATATTTTTGACACACATTCTGGTTATGTAAAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCGGACACAGAAGCTCTATTTGTGGCTATTGCTGATCGAACCTATGGTAGCTTGTTAGAGTTCAACAGGAAACGTAACTATTTTTACCTAGACTCCATGTTTTGATGAAGTAGAGTGCATCAAGAAGTACAGCTATCTACTTCGTGTGCATACCCACAAGAGTATTTCTAAAATAGGTTTTAAAATATATACGCGAAATGTTTTTTTAGCGTTATTTTTCTGTTGAATTTAGTGGGAAAAGCAAGTTGTAAATTTTGGCTCTAGCTCTAGTTTAGAATGCAATTTTTTTTATTTTTTAATTTTGATTTTAATTTATGAGCGTTTGTGTAGTTGCTTAGTTTTTGGAATTTCCTTGCTTGCTATTATTGTATAAAAACAATGAAATCAAACAATATAGTGCTTGAAACTTATTTTTCCCATGAA 2205 0.429 PWGTSHVVEPPIARLRELSSQPDTWIPTAKKSNPRVDESLESNGRSRKSNGRLNGAHTLAHGFHFLLIRVPPCSFNSQPSSSLPCSLYKYVTPHPLPLPLPHFFIRISILKHMEHFNNDDLDYVLDDDYDFDTTSDIVPQPMSDVDSQDSDFEDDFQTSNANAKTDTTALEARNGKDIQGIPWERLNYSREKYRETRLKQYKNYENLSRSRHHLHKECLKVQKGKTFYDFHFNTRLVKSTIVHFQVEILFIAAYYVDSPTFGSFIYDIINGLFASIRAGSSYLAENKTVSCQFMDMDASRLWWRVSSLAGPYIMLRNLLWATTKHDVYLMQNYSVMHWSALLRRGKEVLNVAKPITPTLKRPGCLAQPVSRVQISTMTVKENLLVAGGFQGELICKHLKHPEVLICGKITTGDNAITNAVDVYRNQVGSLRVITANNDSQVRVFDAQNFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKVTGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGKMGAIRALRFTSDGRFLAMAEPADFVHIFDTHSGYVKGQEIDLFGEIAGISFSPDTEALFVAIADRTYGSLLEFNRKRNYFYLDSMF 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02827 628 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Pste2g02827 628 Pfam WD domain, G-beta repeat 491 528 IPR001680 GO:0005515
Pste2g02827 628 FunFam WD-40 repeat family protein 409 625 - -
Pste2g02827 628 SMART WD40_4 489 528 IPR001680 GO:0005515
Pste2g02827 628 SMART WD40_4 532 571 IPR001680 GO:0005515
Pste2g02827 628 SMART WD40_4 448 486 IPR001680 GO:0005515
Pste2g02827 628 SMART WD40_4 403 445 IPR001680 GO:0005515
Pste2g02827 628 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 118 625 - -
Pste2g02827 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 531 - -
Pste2g02827 628 MobiDBLite consensus disorder prediction 19 53 - -
Pste2g02827 628 SUPERFAMILY WD40 repeat-like 368 608 IPR036322 GO:0005515
Pste2g02827 628 Gene3D - 363 623 IPR015943 GO:0005515
Pste2g02827 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02827 Pste-Chr2 28358174 28366388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02827 414 608 Miscellaneous Gene Families AT5G08390 25.000 1.64e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02827 2 28358174 28366388 Pste2g02827 2 28358174 28366388 ECH