Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02454 ATGAAATTTTCAGCAATTTGGCGTGGCAGAGAATGTTCTTCACTACCATGGATATCTCCTCTTAAATTGACAAAACCCGCAGTGGCAGAACCTAAACGGGACCCGCCCCCTGAAACCATCGGCGAAGCTCCGAGGAAGCGCAAGTACATCTCTCACGACATTGCCATCAACTTAATCAAACGGGAGAAAGACCCGCAGCACGCATTGAGGATATTCAACATGGTATCAGAACAGAAGGGTTTTCAACACAACAACGCCACCTACGCCACCATTCTCGAGAAGCTCGCTCGCTGCAACAAATTTCACGCCGTCGATCGCCTCCTCCATCAAATGACCTACGAAACCTGCAAATTCCATCAGGGTATATTCATCAACCTCATGAAGCATTTTTCCAAGTCCTCCCTTCACGAAAAAGTTCTCCACGCCTTCTTCTCCATTCAGCCTATTGTAAGAGAGAAACCCTCCCCCAAAGCCCTCACCACTTGTCTCAACCTTTTGCTTCAATCTAACCGCGTTCATTTGGCGCGGCAATTGCTGTTACATGCCAAACGCACTCTAACACATAAGCCTAACGTCTGTGTATTTAATATCTTAGTCAAGTACCATTGCAGAAACGGGGATCTTGATTCTGCTTTTGAGGTTGTACAGGAAATGAGAAACTCTAAGTTGTCTTACCCTAATTTAGTTACTTACTCGACCCTCATGGATGGATTGTGTCGAAATGGGAGACTCAAAGAAGCCTTTCAACTGTTTGAGGAAATGGTTTCAAGGGATCATCTTGTGCCTGATCCTCTTACTTACAATATTTTGATCAATGGATTTTGCTGCGGAGGAAAACCTGATCGTGCTAGAAATGTGATTGAATTTATGAAGAGTAATGGATGCTATCCAAATGTCTATAATTACTCCGCCCTGGTGAATGGTTTGTGTAAAGTTGGGAAGCTGCAAGATGCAAAAGGGGTTTTGGCTGAGATGAAGACCTGTGGTTTGAAACCGGATACTGTTACTTACACTAGTTTGATCAATTTCTTGTGTAGGAATGGACAAATTGGTGAAGCTATGGAGTTGTTTGAAGAAATGAAAGAAAATGGGTGCCAGGCTGATACTGTTACATTCAATGTCATACTTGGAGGTTTGTGCAGAGATGGTAGATTTGAGGAGGCTCTGAATATGCTTGAGAAACTCCCACAGCAGGGTGTGTATTTGAACAAAGGTAGCTACAGGATTGTTCTAAACTCCTTGACCCAAAAATGTGACTTGAAAAAGGCAAAGGAGTTACTGGGGCTAATGCTAAATAGGGGGTTTCAGCCCCATTATGCAACCTCAAATGAATTATTGCTTTGTCTTTGTAAGGCAGGAATGGCTGATGATGCTGCTAGGGCACTATTTGACTTGGTGGAGATGGGGTTCCAGCCTGGACTTCAGTCTTGGGAAGTTTTAATTGGATTAATCTGCAGAGATAGAAAGTTGTTGCTAGCACTTCCTGATCCCCCATACCCGCCATGTCAAGCTAGAGGAATTAGACCACTGACAAACTACTCATACAGAACAAAAAGCCTCTGTACAAAAACTAGAGGCTCTGCTCTTAGACCACAGTTTGTTGAAGAGGCATTGGCTCCTCATAATCCTCCACTTAAGCTAAGATTTGTTGACAACACAGATCCTGCTGGAATCGATCATCAGATTGCACAACTTGGGCCAGAGCTAGCTTCAACTATTGTGATTGTGATTTCAAAGCTCTCCGTGGAGATTCAGATTTTTTGTTTGATTATGATGTTATAA 1782 0.4327 MKFSAIWRGRECSSLPWISPLKLTKPAVAEPKRDPPPETIGEAPRKRKYISHDIAINLIKREKDPQHALRIFNMVSEQKGFQHNNATYATILEKLARCNKFHAVDRLLHQMTYETCKFHQGIFINLMKHFSKSSLHEKVLHAFFSIQPIVREKPSPKALTTCLNLLLQSNRVHLARQLLLHAKRTLTHKPNVCVFNILVKYHCRNGDLDSAFEVVQEMRNSKLSYPNLVTYSTLMDGLCRNGRLKEAFQLFEEMVSRDHLVPDPLTYNILINGFCCGGKPDRARNVIEFMKSNGCYPNVYNYSALVNGLCKVGKLQDAKGVLAEMKTCGLKPDTVTYTSLINFLCRNGQIGEAMELFEEMKENGCQADTVTFNVILGGLCRDGRFEEALNMLEKLPQQGVYLNKGSYRIVLNSLTQKCDLKKAKELLGLMLNRGFQPHYATSNELLLCLCKAGMADDAARALFDLVEMGFQPGLQSWEVLIGLICRDRKLLLALPDPPYPPCQARGIRPLTNYSYRTKSLCTKTRGSALRPQFVEEALAPHNPPLKLRFVDNTDPAGIDHQIAQLGPELASTIVIVISKLSVEIQIFCLIMML 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02454 593 Pfam PPR repeat 293 326 IPR002885 -
Pste2g02454 593 Pfam PPR repeat 188 219 IPR002885 -
Pste2g02454 593 Gene3D - 519 586 - -
Pste2g02454 593 Pfam PPR repeat family 226 275 IPR002885 -
Pste2g02454 593 Pfam PPR repeat family 332 381 IPR002885 -
Pste2g02454 593 SUPERFAMILY HCP-like 239 449 - -
Pste2g02454 593 SUPERFAMILY SIS domain 526 579 IPR046348 GO:0097367|GO:1901135
Pste2g02454 593 Pfam Phosphoglucose isomerase 526 579 IPR001672 GO:0004347|GO:0006094|GO:0006096
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Pste2g02454 593 PANTHER OS03G0856100 PROTEIN 153 486 - -
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Pste2g02454 593 Pfam PPR repeat 406 435 IPR002885 -
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Pste2g02454 593 NCBIfam pentatricopeptide repeat 370 403 IPR002885 -
Pste2g02454 593 NCBIfam pentatricopeptide repeat 335 368 IPR002885 -
Pste2g02454 593 NCBIfam pentatricopeptide repeat 229 263 IPR002885 -
Pste2g02454 593 NCBIfam pentatricopeptide repeat 266 299 IPR002885 -
Pste2g02454 593 NCBIfam pentatricopeptide repeat 406 437 IPR002885 -
Pste2g02454 593 NCBIfam pentatricopeptide repeat 194 226 IPR002885 -
Pste2g02454 593 NCBIfam pentatricopeptide repeat 302 334 IPR002885 -
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Pste2g02454 593 Gene3D Tetratricopeptide repeat domain 41 148 IPR011990 GO:0005515
Pste2g02454 593 Gene3D Tetratricopeptide repeat domain 277 381 IPR011990 GO:0005515
Pste2g02454 593 Gene3D Tetratricopeptide repeat domain 382 494 IPR011990 GO:0005515
Pste2g02454 593 Gene3D Tetratricopeptide repeat domain 149 276 IPR011990 GO:0005515
Pste2g02454 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02454 Pste-Chr2 24689269 24692287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02454 125 509 Glycosyltransferase AT1G05670 30.649 3.78e-51 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02454 2 24689269 24692287 Pste2g02454 2 24689269 24692287 ECH