Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02155 CGCCAAGGCCAAAGTTGCACTTCAGTTACTTAGCAAAACCCTAAACCCCTCTCACGTCTCGGAGACTCTGCATTCATCAATGGCGACGCAATTGTTAGACGAAGATACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGACAGCAACCTGCTCAGTGACAATTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGCATGCTTAGTTTGGCGCTGATTTGCTCTTTTAATCGAATGCGCAAGCATCTTAATTTGGGTGATGTAAAGCCCGATGAGGTGGCTCCAGACACTGTCAATGCTGTTGCTCAAACTTTGAAGAAAAATTCGACTTCACTCAAGGTTTCTGAAGATGGGAAAAAGGTTGGCAGGACAACTGAACTTCCAAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTCAATATGATCTGAAGCTTGAAGATGCGGAGAAATTCTTTGGGCAATATGCTAAGGTTAATAGTGTCCGTCTTCCCCATCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCTCTTGTTGAATTGTCTTCTGAGGAAGAAGTAGAGAAAGTAAAGAAGGAAAAATTGGTATATGCTGGAGTGGAGTTAGAAGTAAAACCAAAGAAAGACTTTGATGCAGATAGAGAAAAAGAATTAGAAGATTTTAAAAAAACTCGTCCACCTGTTGGTTCAAATCACCAGAATAACTCAAATGTAGAAGACTACACTAAAGGCTTGATTATTGCCTTCAAATTAAAGAGCATTTCAGAGGAAATCCCTTCAGAGCAAAATGGTGTTGATCAACAAGCCAATGACAATAGTGTTGTCTCTACAACTGATGAAAACCCCCACTCTGAAATTACATCTGGGAAAAATGACCAAAAGGTAACAGAAAATGCTGGCAATGAAGAAAAGAATGAGGTGAAAGAAGCAAAGGAAAATGAAGGTGAAGAAAACAATGAGATGAAAGAAGCTAAGGAAACTGAAAGTGAAGTAGACAATGAGATGGAAGAAGCAAAGGAAACTGAAAGTGAAGTAGACAATGAGATGGAAGAAGCAAAGGAAACTGAAAGTCAAGAAAACATTGATATGAAAGAAGCAAAGGAAACTAAAGGTCAAGAAAACATTGAGATGAAAGAAGCAAAGGAAACTAAAGGTCAAGAAAACATTGAGATGAAAGAAGCAAAGGAAACTGAAGGTGAAGAAAACAAAGAGACGAAAGAAGGAAAGGTGACTGAAGTTGAAGAAAAGAAACGACAAGCTGGTGAAAAATTTTCTGTCGCTGCATACAAGGACAACATGGATGTTGTCACACGTGAGGATTTGAAGAGTGTCTTTGGGAAATTTGGTACAGTGAAGAAAGCTCGTGCTGCTGCAGTTATTTCTGAAAAGGGTGGCTTGGTTGTAAAGAATTATATCGCTCTTCTAGATCCATTGACTGGCGAGGCTGAAAGGGAATACTGGAGCCTGCTTCGTGGTAATCAAGGCAAACACAGAGAATATAAGAGTAAACAGGGGAGGGGAGGATGGCATGGTAGAGGGGGTAAACATGGACGATCTAGAGAGAATGAGTCTAGAGTAGATCGCCCAAATAAGGCTCAGAAAGTTGGTGCTGCATAATGGGTTATATCCATCAGTTTTGAGATCAAGTTGGAAGGTTCGGAACCAGCTTAGTGCTTGGTTGCTTGATTTGTTTTCCTCTAATATAATATATATTTTGATTTTATGGTTCGCTGTAAGATGGTATCATTACTTGCAATGTTTCTTTATAAATTGTCACATGCC 1813 0.3971 MATQLLDEDTTKKVIRQVEFYFSDSNLLSDNFMRKSITESEDGMLSLALICSFNRMRKHLNLGDVKPDEVAPDTVNAVAQTLKKNSTSLKVSEDGKKVGRTTELPKLEEVEQVEIRTLAVSPFQYDLKLEDAEKFFGQYAKVNSVRLPHHVGDKKFFCGTALVELSSEEEVEKVKKEKLVYAGVELEVKPKKDFDADREKELEDFKKTRPPVGSNHQNNSNVEDYTKGLIIAFKLKSISEEIPSEQNGVDQQANDNSVVSTTDENPHSEITSGKNDQKVTENAGNEEKNEVKEAKENEGEENNEMKEAKETESEVDNEMEEAKETESEVDNEMEEAKETESQENIDMKEAKETKGQENIEMKEAKETKGQENIEMKEAKETEGEENKETKEGKVTEVEEKKRQAGEKFSVAAYKDNMDVVTREDLKSVFGKFGTVKKARAAAVISEKGGLVVKNYIALLDPLTGEAEREYWSLLRGNQGKHREYKSKQGRGGWHGRGGKHGRSRENESRVDRPNKAQKVGAA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02155 522 Gene3D - 6 107 IPR036388 -
Pste2g02155 522 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Pste2g02155 522 SUPERFAMILY "Winged helix" DNA-binding domain 5 107 IPR036390 -
Pste2g02155 522 MobiDBLite consensus disorder prediction 338 403 - -
Pste2g02155 522 MobiDBLite consensus disorder prediction 314 337 - -
Pste2g02155 522 MobiDBLite consensus disorder prediction 244 279 - -
Pste2g02155 522 Coils Coil 387 407 - -
Pste2g02155 522 Pfam La domain 14 83 IPR006630 -
Pste2g02155 522 SMART la 8 101 IPR006630 -
Pste2g02155 522 PANTHER LUPUS LA PROTEIN-RELATED 9 376 IPR045180 -
Pste2g02155 522 MobiDBLite consensus disorder prediction 280 313 - -
Pste2g02155 522 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pste2g02155 522 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pste2g02155 522 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pste2g02155 522 MobiDBLite consensus disorder prediction 244 403 - -
Pste2g02155 522 MobiDBLite consensus disorder prediction 475 522 - -
Pste2g02155 522 MobiDBLite consensus disorder prediction 475 490 - -
Pste2g02155 522 MobiDBLite consensus disorder prediction 498 514 - -
Pste2g02155 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Pste2g02155 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 177 IPR000504 GO:0003723
Pste2g02155 522 FunFam La protein 2 6 107 - -
Pste2g02155 522 Coils Coil 277 381 - -
Pste2g02155 522 SUPERFAMILY RNA-binding domain, RBD 109 194 IPR035979 GO:0003676
Pste2g02155 522 CDD LA_like_plant 10 100 - -
Pste2g02155 522 Gene3D - 108 200 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02155 Pste-Chr2 21573329 21582798 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02155 2 21573329 21582798 Pste2g02155 2 21573329 21582798 ECH