Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01828 ATGGCCACTACTCCTTCATCTGCATACCCTTTTGGAATCCCTTTCCACTCGTACGGTCGCAGAGTGGAATGCTCCTCCTTCATGTTCCCCCTTCATGCAGACCTCTCAACAATTCCTATTTGCCCACGTTCTTCTTCGAAGGTATCTGTCTCAAATCTCAATTATGTTCTTTCATGGATTCTGGACAACACACTTTACTGGAATTTCAATCCTGTTTCTGTGTTAGAGAAGGATTTGTCATTTAGATTAGTTGATCGAGTATATGCAAAACTTGATACTGATGATTACTACTGGGAGAAAGTTCCAACACCTATTCTTGACATGGTTGAAAACCCTCTTTGCTTGAAGAATTTATCTCTTAAGGAACTGAAACAACTAGCAGTTGAAATCCAGTCAGATTTATCTTATATTATGTCAGGTACACAGATATCACCAAAAGCAAGTATGGCAGCGGTGGAGCTGACAATTGCAATACATCATGTTTTCAATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACTGGAAGGCGATCACTCATGACGACAATGAGAAGAAAGAATGGTCTTTCTGGTTTTACTTCCCGGTTTGAGAGTGAATATGATGCATTTGCTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTTGCTCGGGATATTAAGGGGAGGCGAGAACGCATAGTTGCTGTTATCAGCAATTGGACAACCATGGCTGGTCAGGCATATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGATAGTCGTCATTCTTTACTTCCAAAAATTGAGGAGGGTCCAAAGACATCTGTCACTGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTGACAAAACGAATTGGTAGAGGTATGCATGAGTTGGCAGCTAAAGTTGATGAATTTGCTCGTGGTATGGTGGGCCCTCTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTATTACATAGGCCCAGTGGACGGACACAATATTGAAGATCTAATATGTGTTCTGCAAGAAGTTGCTTCCCTGGATTCAATGGGACCTGTCTTGATACATGTGATAACTGATGAAAATCGGGGAGATGAAAACAGTCATAAAAGTGATATATCAGACAGGCAGCAGGATGATGATTCTGTTAAATCTAATTTGTTAGATAATGCTGTCCAGCATCAAACATATGATGATTGCTTTGTGGAGACTTTAGTCTCAGAAGCAGAGAAAGACAAAGATATCGTCGTTGTTCATGCAGGAATAATGACAGGACCATCACTTGATCTGTTTCGGGAAAAATTTCCTGATAGATTTTTTGATGTGGGAATGGCGGAGCAACATGCAGTCACATTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGTGTCATACCTTCTTCCTTTCTTCAAAGAGCCTATGACCAGGTTGTACATGATGTTGATCAACAGAGAATTCCAGTGCGTTTTGTTATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTTCAATGTGGAGCATTTGATATAAACTTTATGTCATGCTTACCAAACATGATTGTCATGGCACCATCTGACGAGGTTGAACTCATGCACATGGTGGCTACTGCTACTTGTATAAACAATCAGCCAATCTGCTTTCGGTATCCAAGGGGTGCTCTGATTGGGAAAGGCTACACTATAGGTGAAGGAATCCCCATGAAGATTGGAAGAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTCCTAGGATATGGATCGATGGTTCAGAACTGCCTAAAGGCTTATTCACTCCTTACAAAACTTGGCGTTGAGGTAACTGTTGCTGATGCAAGGTTCTGCAAACCTCTTGACATGAAGCTTCTGAGGCAGCTTTGTAAACACCACACTTTTCTAGTTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAGTTTATTGCAGTAAATGGACTACTTGATGGAAGAATTAAGTGGCGACCAATTGTCTTACCAGACAGATATATTGAGCATGCCTCCCCAAATGAACAGCTTGACCAAGCAGGGTTGAGTGGCCATCACATAGCTGCCACGGCATTGAGTTTGCTAGGTCGTACTCGGGAAGCTCTACAATTTATGTGTTCTTGATATATATGTTTCGTGCCCTTTTCCAGATACAAATGGGTGGTTGGATAACTTCATTGGAAGGAGAACCAAGAAAGCAAATGTGTCTAAGAATGCCCTTTTCTATGTATAGAACACATGTTAGATAGTAAAAAGGTAATTAACGGAATTTTTATTTTTGGACATCTAACACTGTAAATTGTTGAGAACGTGCCTTTTGGATGCAGTAGCTTTAGTTTGAATAATGATAATAAAAAAAAAGAATATGTCATTTTGTCGACAGTGGATATGTTAGTTTTTTATTCTAGGTTTAAATATATTTTTAGTTCCTTAA 2554 0.406 MATTPSSAYPFGIPFHSYGRRVECSSFMFPLHADLSTIPICPRSSSKVSVSNLNYVLSWILDNTLYWNFNPVSVLEKDLSFRLVDRVYAKLDTDDYYWEKVPTPILDMVENPLCLKNLSLKELKQLAVEIQSDLSYIMSGTQISPKASMAAVELTIAIHHVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTMRRKNGLSGFTSRFESEYDAFAAGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVTALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEFARGMVGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLIHVITDENRGDENSHKSDISDRQQDDDSVKSNLLDNAVQHQTYDDCFVETLVSEAEKDKDIVVVHAGIMTGPSLDLFREKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCVIPSSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDINFMSCLPNMIVMAPSDEVELMHMVATATCINNQPICFRYPRGALIGKGYTIGEGIPMKIGRGRVLVEGKDVAFLGYGSMVQNCLKAYSLLTKLGVEVTVADARFCKPLDMKLLRQLCKHHTFLVTVEEGSIGGFGSHVAQFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALQFMCS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01828 747 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 106 390 IPR005477 GO:0008661|GO:0016114
Pste2g01828 747 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 425 593 - -
Pste2g01828 747 Pfam Transketolase, pyrimidine binding domain 427 588 IPR005475 -
Pste2g01828 747 Gene3D - 604 735 IPR009014 GO:0003824
Pste2g01828 747 Gene3D - 98 397 - -
Pste2g01828 747 MobiDBLite consensus disorder prediction 392 411 - -
Pste2g01828 747 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 426 614 IPR029061 -
Pste2g01828 747 SUPERFAMILY TK C-terminal domain-like 600 735 IPR009014 GO:0003824
Pste2g01828 747 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 108 733 IPR005477 GO:0008661|GO:0016114
Pste2g01828 747 SMART Transket_pyr_3 426 591 IPR005475 -
Pste2g01828 747 Gene3D - 425 592 - -
Pste2g01828 747 CDD TPP_PYR_DXS_TK_like 432 585 - -
Pste2g01828 747 Pfam Transketolase, C-terminal domain 604 727 IPR033248 -
Pste2g01828 747 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 87 742 IPR005477 GO:0008661|GO:0016114
Pste2g01828 747 CDD TPP_DXS 147 395 IPR005477 GO:0008661|GO:0016114
Pste2g01828 747 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 105 736 IPR005477 GO:0008661|GO:0016114
Pste2g01828 747 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 604 736 - -
Pste2g01828 747 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 103 488 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01828 Pste-Chr2 18657014 18664608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01828 464 686 Acyl Lipid Metabolism Gene Families AT1G55510 24.583 8.02e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01828 2 18657014 18664608 Pste2g01828 2 18657014 18664608 ECH