Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01428 ATGCTCTTGCGACTGCGAGTCACTCCCACTGCGAACCCTTTAACCTCATGCGCTCACCTCACACACTCCCACTCTCTCCCTCAATGGTTCTCCATCCTCCGCCACGCCATTGCAGTCTCCGACTTACCCCTAGGCAGGCGGGCCCACGCGCGCATCTTAACGTCTGGCCATCACCCCGACCGTTTCCTAACGAACAACCTCATCACCATGTACGCCAAATGCGGCTCCCTCTCCTCCGCTCGCAAACTGTTCGACACTACGCCCCACGCCAACCGAGACCTCGTTACCTGGAACGCCATCCTCGCCGCCCACGCCGCCGACGCCGACGCCGACGCCACCCACGACGGCTTCAACCTCTTCCGCCTCCTCCGCCAGTCCGTCGTCTCCACCACTCGCCACACTCTCGCCCCCGTCCTCAAAATGTGCCTCCTCTCCGGTTCCCCCTCCGCCTCCGACTCCCTCCACGGTTACGCCCTTAAGATAGGGTTGCAATGGGACGTGTTCGTCGCTGGTGCATTAGTCAACATTTACGCCAAGTTTGGACGAGTCAGAGAGGCGCGCCTTTTGTTCGACGGAATGGCCGTCAGGGACGTTGTGCTCTGGAACGTCATCATCAAGGCTTACGTCGACTCCTGTCTCCACGATGAGGCGTTCCTTCTCTTCTCTCACTTTCACCGAACTGGACTGCGCCCCGATCACGTCACCCTCCGTACTCTCGCGCGGGTTGGTAAAATTCAAAAAACTGTTTCTGAATCCCAGTTTAAGCAGCTTCGAGCTTATGCTACCAAATTGTTTCTATATGACGATGATTCTGATGTTATTTTGTGGAATAAGACGCTGTCTCGTTGTCTTCAGAGAGGAAAAGCTTGGGAAGCTGTTGATTGTTTTGAGGATATGATAAACTCGGGTGTTGCCTGTGACAGCTTGACTTTTGTTGTGATGTTGTCTGTGGTTTCTAGTTTGAACTGTCTTGAAATGGGGAAACAGATTCACGGTATTGTCGTCAGGTCCGGATTGGATCATGTTGTACATGTTGGAAATAGTCTCATCAACATGTATGTTAAGGCTGGTTGTGTTTCTCACGCCAGATTAGTGTTTGGTCTAATGAATGAGGTGGATTTGATATCGTGGAATACTGTGATATCAGGTTGTGCGCTGAGTGGTTTGGAGGAGTGTTCTGTCAGCATGTTTGTTGATTTACTACACAGTGGCCTATTGCCAGATCAATTCACCATTGCGAGTGTTTTGAGGGCTTGTTCCTCTCTTGAAGAAGACTGTTATGTTGCCGCACAGATTCATGCTTGTGCAATGAAATCACTTTCCCCTCAAGAGGAGGAGCAAAGTAAAAAACGAAAACTACCCGATGATGATCATTCTCCTTTGCCCGAATCATCCTCTTCCAACATGAAACCCAGAAGGTATCAGATAGAGGTGTTTGAAGTAGCAAGGAAAACGAACACTATAGCCGTGTTGGATACAGGGTCTGGTAAGACCTTGATTGCTGTGATGCTTATGAAAGAGGTTGGCCAAGCTATCAAGATTAGTGGTGTAAAAAAGCTGATTGTTTTCTTGGCTCCTACGGTTCATCTTGTGAATCAGGCATGTTAG 1608 0.5025 MLLRLRVTPTANPLTSCAHLTHSHSLPQWFSILRHAIAVSDLPLGRRAHARILTSGHHPDRFLTNNLITMYAKCGSLSSARKLFDTTPHANRDLVTWNAILAAHAADADADATHDGFNLFRLLRQSVVSTTRHTLAPVLKMCLLSGSPSASDSLHGYALKIGLQWDVFVAGALVNIYAKFGRVREARLLFDGMAVRDVVLWNVIIKAYVDSCLHDEAFLLFSHFHRTGLRPDHVTLRTLARVGKIQKTVSESQFKQLRAYATKLFLYDDDSDVILWNKTLSRCLQRGKAWEAVDCFEDMINSGVACDSLTFVVMLSVVSSLNCLEMGKQIHGIVVRSGLDHVVHVGNSLINMYVKAGCVSHARLVFGLMNEVDLISWNTVISGCALSGLEECSVSMFVDLLHSGLLPDQFTIASVLRACSSLEEDCYVAAQIHACAMKSLSPQEEEQSKKRKLPDDDHSPLPESSSSNMKPRRYQIEVFEVARKTNTIAVLDTGSGKTLIAVMLMKEVGQAIKISGVKKLIVFLAPTVHLVNQAC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01428 535 Gene3D Tetratricopeptide repeat domain 274 476 IPR011990 GO:0005515
Pste2g01428 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Pste2g01428 535 MobiDBLite consensus disorder prediction 443 459 - -
Pste2g01428 535 Pfam PPR repeat 347 371 IPR002885 -
Pste2g01428 535 Pfam PPR repeat 172 195 IPR002885 -
Pste2g01428 535 Pfam PPR repeat 375 404 IPR002885 -
Pste2g01428 535 Pfam PPR repeat 65 85 IPR002885 -
Pste2g01428 535 Pfam PPR repeat 199 223 IPR002885 -
Pste2g01428 535 Gene3D - 477 534 IPR027417 -
Pste2g01428 535 Gene3D Tetratricopeptide repeat domain 155 270 IPR011990 GO:0005515
Pste2g01428 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Pste2g01428 535 Pfam PPR repeat family 272 316 IPR002885 -
Pste2g01428 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 534 IPR027417 -
Pste2g01428 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Pste2g01428 535 NCBIfam pentatricopeptide repeat 199 232 IPR002885 -
Pste2g01428 535 FunFam Pentatricopeptide repeat-containing protein At4g33170 12 146 - -
Pste2g01428 535 Gene3D Tetratricopeptide repeat domain 11 154 IPR011990 GO:0005515
Pste2g01428 535 Pfam Type III restriction enzyme, res subunit 470 534 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pste2g01428 535 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 421 IPR046960 GO:0003723|GO:0009451
Pste2g01428 535 MobiDBLite consensus disorder prediction 441 469 - -
Pste2g01428 535 FunFam Pentatricopeptide repeat-containing protein At4g33170 275 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01428 Pste-Chr2 15557777 15573485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01428 191 439 Glycoside Hydrolase AT3G49170 25.097 1.00e-18 88.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01428 2 15557777 15573485 Pste2g01428 2 15557777 15573485 ECH
Pste6g03498 6 23691268 23699501 Pste2g01428 2 15557777 15573485 ECH
Pste2g01202 2 13015099 13030790 Pste2g01428 2 15557777 15573485 ECH