Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01378 ATGGAGACAACTCCGCAACAAGGCGTGGTGAAGAAGAAGGAGACAAGGGGCCGAAAGCCGAAACCAAAGGACGAGAAGAAAGAGGAACAACAACATGCGAAGACGATTAAGGAAGCGAGAAAAACACAGCAACAGCTTCAACAGCAACAACAACAACAACAACAACCTTCGGTGGACGAGAAATACACGCAATGGAAGTCCCTCGTCCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCACTGATGGCAGCGTGCCGAATACTTTGGTGATTGCGAATTGCGAGTTTAATGAAGAAGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAGTTGCCACAGAATTCCAAGATAGTGGCCACACATACTGACAGCCCTGATGTTCTTGTTTGGGATGTTGAAAATCAACCTAATCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATTTGATATTAACTGGACACCAAGATAATGCAGAATTTGCTCTTGCTATGTGTCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAAGACAAAACGGTGGTGCTGTGGAGTATCGAAGACCATATAACATCAGCTGCCACAGACAACAAATCTGGTGGGTCAATTATCAAATCAAACTCCAAATCTGGAGAAGGCAATGATAAAATTGATGGCCCTACTGTTGGACCAAGAGGTATCTACTGTGGGCATGACGATACTGTTGAAGATGTCACTTTCTGCCCATCTAGTGTTGGAGATGATTCTTGTCTCATTTTATGGGATGCACGTGTTGGTTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCCGTTCGTATGTTTGATCGCCGCAACCTCACCAATAATGGGGTTGGGTCACCAATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTGTCCAGACAAAGCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAGTCAATCAGTCCTCCACCAGGGTTGTTTTTCCAACATGCAGGTCATAGGGATAAAGTTGTTGACTTCCATTGGAACGCATATGATCCATGGACACTTGTCAGTGTATCTGATGACTGTGAAAGTACCGGTGGAGGTGGAACGTTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAAACGAAGTTTTGGAAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCATGTGCTTCAAAGAGTGAAAAATGATATACTTCGTAGGCAAAAAGAGATATTATTCTTGCTGTTGTATTAATCTTCATTTGCGGTGGATGTTTGTTAGCATTTTAAAACCCACCCACATATGGGGCTGGAGTAGGGAAACTTAGATTAACGTAGAACTGACGAGGGTTTGTGGCTAGTGTTACTTGAATTGATACAATTCCATTTTCTGTTTGAAGATCATCATCCTTTTCTTCATGTGGCTCTTCACATGTTTCTGCTGCTGCCAAATTTGAATGTGCTCCTCACTGCTCTATCCACCAACCACCGTAACATTCATTGTTAATTCATGATCATTGGCACTTCAAACTCTAGACATGCTTTCTATTACCAATTGGGATTCTTATGCTCTTTTTACGTTTTGCTTTTAGAATTTGATAGCTTGATATACGAATGTGCAGATAGCTAGGTGTTATTGTGATGGTGCTATTATTCGTAGCTGCCTAGCTGGATGATGCTACAGTGAGGTTTGTAAAAATAGTGTGAACCTGCAGGTTAGATTTGGTGGAGGGATATCTGAAAGGCAATAAAATGTAGGTCTAATTACTTTTGGTCTTCTAATTGATTTTTTAAATTTAGCTTGGTCTTATTAATATAAAGTTC 1998 0.4224 METTPQQGVVKKKETRGRKPKPKDEKKEEQQHAKTIKEARKTQQQLQQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLTDGSVPNTLVIANCEFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDNKSGGSIIKSNSKSGEGNDKIDGPTVGPRGIYCGHDDTVEDVTFCPSSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTNNGVGSPIHKFEGHKAAVLCVQWCPDKASVFGSSAEDGLLNIWDYEKVGKKIERSGKSISPPPGLFFQHAGHRDKVVDFHWNAYDPWTLVSVSDDCESTGGGGTLQIWRMSDLIYRPENEVLEELEKFKSHVVACASKSEK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01378 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 314 IPR001680 GO:0005515
Pste2g01378 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 365 IPR001680 GO:0005515
Pste2g01378 460 MobiDBLite consensus disorder prediction 7 39 - -
Pste2g01378 460 MobiDBLite consensus disorder prediction 1 59 - -
Pste2g01378 460 SMART WD40_4 274 314 IPR001680 GO:0005515
Pste2g01378 460 SMART WD40_4 159 199 IPR001680 GO:0005515
Pste2g01378 460 SMART WD40_4 235 269 IPR001680 GO:0005515
Pste2g01378 460 SMART WD40_4 381 428 IPR001680 GO:0005515
Pste2g01378 460 SMART WD40_4 323 363 IPR001680 GO:0005515
Pste2g01378 460 MobiDBLite consensus disorder prediction 210 232 - -
Pste2g01378 460 Coils Coil 29 52 - -
Pste2g01378 460 SUPERFAMILY WD40 repeat-like 101 451 IPR036322 GO:0005515
Pste2g01378 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 314 - -
Pste2g01378 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 365 - -
Pste2g01378 460 MobiDBLite consensus disorder prediction 210 228 - -
Pste2g01378 460 Pfam WD domain, G-beta repeat 164 199 IPR001680 GO:0005515
Pste2g01378 460 Pfam WD domain, G-beta repeat 282 314 IPR001680 GO:0005515
Pste2g01378 460 Pfam WD domain, G-beta repeat 324 363 IPR001680 GO:0005515
Pste2g01378 460 Gene3D - 32 446 IPR015943 GO:0005515
Pste2g01378 460 MobiDBLite consensus disorder prediction 40 59 - -
Pste2g01378 460 PANTHER WD40 REPEAT FAMILY 82 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01378 Pste-Chr2 15096814 15104302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01378 244 423 Miscellaneous Gene Families AT5G08390 27.225 1.37e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01378 2 15096814 15104302 Pste2g01378 2 15096814 15104302 ECH