Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01235 ATGGTGGAGAGCGCAAAGTTGTTCCAGTTTCAGTTCCAGTTCCAGTTCCTCCCCAAAACGGCACCGTTCGCCGCTCACAAAACGCTCTTCGCGTGTCTGTGGGTTGTGGCGGTGGCCTCGCTGTTGGTGTGGCAGAGCAACAGCATAAGCGGGTTTCTCGTGCTGGGCGGTGTTCCGGTGCAGGCGCCGCCCAAGCTGCGTTCGGTGGTCTTCTGTTTGACGGAGTTTGGTGGGGTGGGTGACGGCGTTACTCTGAACACGGAGGCGTTCCAGAGAGGCGTTAGTGTAATATCCAAGTTGGGAGGAGGTCAACTGAATGTGCCACCTGGACGCTGGCTCACGGCGCCGTTTAATCTCACCAGTCATTTCACTCTTTTTCTTGCTCAAGATGCTGTCATACTTGGAATTCAGGATGAGAAGTATTGGCCACTAATGCCCGCATTACCTTCATATGGGTATGGAAGGGAGCATCCTGGGCCTCGATATAGTAGTTTGATTCATGGTCAAAATCTTAGAGATGTTGTCATAACAGGCCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCGCCAGAAGCTTCTCAACCACACGAGGGGGCCACTTGTTCAGATATTGTGGTCTAGTAACATTGTGATTTCGAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGATTGCAAAAATGTTACAGTGAAAAATGTTACTATATTGGCTCCAGTATACCACGCTCCTAATACTGATGGCATAGATCCTGGCAAGTATCTTTTAGTCTTCTACAAACTGCTATATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAATTTGGAATTACTTATGGAAGACCTTCCAAGAATATAGTAATTGAAACCTTGTTGTTCGCTCTAATGTCAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCTAGTGGAGAACATTCTTGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACTGCACCAGGAAGAGGTGGTTATGTGCGCCAAATAACATACAAGAATCTAATGTTCAAAAATGTGCGTGTTGGAATTGTGATCAAGACAGATTACAATGAACACCCTGGTGGTGAATATGATCCTAAAGCACTTCCAATCCTTAGAGACATAAGCTTCATCAACATCCGTGGCCAAGGAGTTCGTGTGCCAGTTCGAATTCAAGGTAGTGCACAAATTCCAGTTAGAAATGTGACTTTCCAGGATATGAAGGTTGGCATAACCTACAAGAAAAAGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAAGTAATAGGGACTATCTTTCCTGCTCCCTGTGACAACTTTGATCGGTACAGTGAACAAGGGGAACTTGTTAAGCATGCTGCTTTACACAATGTAACAGATATAGATTATGAAATTTGA 1476 0.4499 MVESAKLFQFQFQFQFLPKTAPFAAHKTLFACLWVVAVASLLVWQSNSISGFLVLGGVPVQAPPKLRSVVFCLTEFGGVGDGVTLNTEAFQRGVSVISKLGGGQLNVPPGRWLTAPFNLTSHFTLFLAQDAVILGIQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVYHAPNTDGIDPGKYLLVFYKLLYSCEDMLIEDCYISVGDDAIAIKSGWDQFGITYGRPSKNIVIETLLFALMSGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYKNLMFKNVRVGIVIKTDYNEHPGGEYDPKALPILRDISFINIRGQGVRVPVRIQGSAQIPVRNVTFQDMKVGITYKKKHIFQCAFVQGQVIGTIFPAPCDNFDRYSEQGELVKHAALHNVTDIDYEI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01235 491 Pfam Glycosyl hydrolases family 28 163 451 IPR000743 GO:0004650|GO:0005975
Pste2g01235 491 PANTHER PECTIN LYASE-RELATED 36 473 - -
Pste2g01235 491 Gene3D - 59 454 IPR012334 -
Pste2g01235 491 SUPERFAMILY Pectin lyase-like 60 464 IPR011050 -
Pste2g01235 491 SMART pbh1 274 295 IPR006626 -
Pste2g01235 491 SMART pbh1 420 441 IPR006626 -
Pste2g01235 491 SMART pbh1 330 351 IPR006626 -
Pste2g01235 491 SMART pbh1 359 380 IPR006626 -
Pste2g01235 491 SMART pbh1 235 262 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01235 Pste-Chr2 13662528 13668387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01235 1 491 Glycoside Hydrolase AT1G19170 67.118 0.0 694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01235 2 13662528 13668387 Pste2g01235 2 13662528 13668387 ECH