Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01107 CACACTTGAGTTGAGCCACTGATCCACAATCACAATGATCGCAATCACTTCCACTGAATTGAACTACTTAATCTTCCGTTACCTCCACGAATCAGGTTTTACTCATTCTGCATTTGCATTCGGATACGAAGCCGGGATTGATAAGAGCAAAAATGAAGAAAGTGTGGTTCCACCCGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATATCTTGAGCTGGAAGCGAACTTGAGTGGTCTCCAGAGTGATGCTGACATGGATGACGATTTTTCGTTTCTACAACCTCTGGATCTTATCACAAAGGACCCGAGTGAACTACACAATATAGTAAAAACCAAAAAGGAAAATCTACGACAACATAAATATGAATCAAATAAAATAACGAATGACTTGAGTCAGGATGACGCAAGGAGGGAACAAATTCAGGAAACAGAGAAAGAGAGGAAAGAAAAGGAAAATGAACACAGACCGGAAAAAACAAAGTTAGAGAAAGAGAAGGAGCAACCAAAGGGTGAATATAAAGAAACACAACACACCGATCAAAGCAATACAGAGAAACATGAAGATAAGATTTCTGTCGAAAATCTAGAAAATAGAGCACATGGAGGGCCTGAGCCAATGGAGATCTCACAGAGTCCCATGTCGTCACCTGATGATACTCCATGTGGGGATGTAAAAGTTTTGAAAGGCCATACATCAGAGGTTTTTGCTTGCGCATGGAATCCATCAGCTCCACTTCTTGCATCTGGGTCTGGAGACTCAACAGCTAGAATTTGGAAAATTGGTGATGGATCTTGTGACTCTAGTGTGCAAAATGAACCGGTAAATGTAGTGGTGCAGGTGCTGCAGCACTTCAAAGAAAGCACCAATGAAAAGAGCAAGGATGTGACAACACTTGACTGGAATGGGGATGGAACACTATTGGCTACTGGTTCCTACGATGGCCAAGCAAGAATATGGACTAGAGATGGGGAATTGAATTGTACACTAAACAAGCACAAAGGTCCAATCTTTTCTCTAAAATGGAATAGGAAGGGGGATTATCTTCTCAGTGGAAGTGTGGATAAGACTGCTATCGTATGGAATATAAAGACTGGGGAATGGAAACAGCTATTTGAATTTCACACCGGCCCAACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAGATTGGAGAGAATCGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCAACAGGCTCTTTGCTGGCTTCCTGCTCTGACGATCACACCGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATATATACAATCCGATGGAGCCCTACAGGCCCTGGTACAAACAGTCCCAATCAGCAGTTAGTGCTAGCAAGTGCCTCATTTGACTCAACAATAAAGCTCTGGGATGTGGAACTAGGGAGTGTACTCTACAGCTTAAACGGCCACAGGGATCCTGTATACTCCGTTGCATTTAGTCCTAATGGGGAGTATCTGGCCAGTGGCTCTATGGATAGATACTTGCATATATGGTCTGTGAAGGAGGGCAAAATTGTAAAAACATACACCGGAAAAGGTGGGATTTTTGAAGTTAATTGGAGCAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTTCGAATGTAAAGTATGGGGGGATACATATTCATCTGTGCTAGTTGCTACAGGTTTTTTGTATAGAGCCATTTGCTACATTTCCCTACTGATATACCCGGTTTTACTACGAATTATATACCAGATGGGTAATCTTA 1878 0.4132 MIAITSTELNYLIFRYLHESGFTHSAFAFGYEAGIDKSKNEESVVPPGALVTFIQKGIQYLELEANLSGLQSDADMDDDFSFLQPLDLITKDPSELHNIVKTKKENLRQHKYESNKITNDLSQDDARREQIQETEKERKEKENEHRPEKTKLEKEKEQPKGEYKETQHTDQSNTEKHEDKISVENLENRAHGGPEPMEISQSPMSSPDDTPCGDVKVLKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIGDGSCDSSVQNEPVNVVVQVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWTRDGELNCTLNKHKGPIFSLKWNRKGDYLLSGSVDKTAIVWNIKTGEWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGENRPIKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNSPNQQLVLASASFDSTIKLWDVELGSVLYSLNGHRDPVYSVAFSPNGEYLASGSMDRYLHIWSVKEGKIVKTYTGKGGIFEVNWSKDGDKVAACFSNNIVCVLDFRM 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01107 572 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Pste2g01107 572 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Pste2g01107 572 PRINTS G protein beta WD-40 repeat signature 473 487 IPR020472 -
Pste2g01107 572 SUPERFAMILY WD40 repeat-like 215 570 IPR036322 GO:0005515
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 310 IPR001680 GO:0005515
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 533 - -
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 251 - -
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 437 - -
Pste2g01107 572 Pfam LisH 8 33 IPR006594 GO:0005515
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 310 - -
Pste2g01107 572 Gene3D - 207 572 IPR015943 GO:0005515
Pste2g01107 572 ProSitePatterns Trp-Asp (WD) repeats signature. 473 487 IPR019775 -
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 361 IPR001680 GO:0005515
Pste2g01107 572 FunFam WD40 repeat-containing protein HOS15 206 572 - -
Pste2g01107 572 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Pste2g01107 572 Gene3D - 2 92 - -
Pste2g01107 572 Pfam WD domain, G-beta repeat 317 352 IPR001680 GO:0005515
Pste2g01107 572 Pfam WD domain, G-beta repeat 272 310 IPR001680 GO:0005515
Pste2g01107 572 Pfam WD domain, G-beta repeat 491 528 IPR001680 GO:0005515
Pste2g01107 572 Pfam WD domain, G-beta repeat 398 435 IPR001680 GO:0005515
Pste2g01107 572 Pfam WD domain, G-beta repeat 441 486 IPR001680 GO:0005515
Pste2g01107 572 Pfam WD domain, G-beta repeat 215 250 IPR001680 GO:0005515
Pste2g01107 572 PANTHER WD40 REPEAT PROTEIN 4 571 IPR045183 GO:0003714|GO:0016575
Pste2g01107 572 MobiDBLite consensus disorder prediction 110 186 - -
Pste2g01107 572 SMART Lish 5 37 IPR006594 GO:0005515
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 444 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 396 435 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 489 528 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 211 250 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 531 569 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 313 352 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 355 393 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 268 311 IPR001680 GO:0005515
Pste2g01107 572 SMART WD40_4 438 486 IPR001680 GO:0005515
Pste2g01107 572 Coils Coil 124 144 - -
Pste2g01107 572 MobiDBLite consensus disorder prediction 110 210 - -
Pste2g01107 572 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 95 - -
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 495 IPR001680 GO:0005515
Pste2g01107 572 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Pste2g01107 572 CDD WD40 215 528 - -
Pste2g01107 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01107 Pste-Chr2 11987868 11995409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01107 400 570 Miscellaneous Gene Families AT5G08390 31.792 2.85e-19 90.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01107 2 11987868 11995409 Pste2g01107 2 11987868 11995409 ECH