Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00561 ATGTTGAGTCTTTACGTGTGTGTATCGGAAGCCAAGGACCTGCCTGTGAAGGACACCTTCGTGAAGCTTAGGCTCGGCAAGTTCAAGTCCAAGACAAGGGTATTGAGGAACACGTGCACCCCAGTTTGGAACCAAGAGTTTTGTTTCGGGGTTCATGATGCTGAGGACGTGCTTTTTGCCTCTGTTGTTAATCATGATAATGAGTGTAGAGTGACCAATGGTTCTGTGGAGTTTGTGGGTGAGGTACGGATTCCGGTAGCTTCAGTTGCTTTTGAAGATAACCAAACCTTGCTGCCCACCTGGTTCTCTCTTGAAAGCCCCAAGAGTGGGAAATTTTTCAATAAATATTGTGGGAAAATTCTGCTTACCGTTTCTCTTCAGGGTAAAGGATGTGCTTCTTTAGTCAATCATAAGAATTCTCCGGATTCAACTAATGCAGTTGGGCACTCAAGAGACTTGGACGGTCTTCACATTTCATGTAAGGCAACTTGTGATAAAATGGGCGGAGGCAAACAATTGTTGAAGGTTATTGCAAATGGTTTGCAGAGGATTTTCAAAAAAAAAGAAGGAAACTCAAAATCTGGGGATTCTTCAGAACTATCCTCTACATTATCTGATTATGAAGATATTGTACAGGAAAGTTCATCTCCTTGTAGCTTTGAAGAAGCCATTGCACTTATGCAATCAGGAGATAACAAACCAGAAATGCCAGAAAATTTGGGGGGCGATGTTCTAGTTGATCAAATTTATTTAGTCTCTCCGAATGACCTTAATGTGTTTCTTTTTGCACCGAATTCACAGTTCAATAAAGAATTGGCTGAATTGCAGGGAACAACAAATGTACAAGAGGGGTCTTGGACATGGAAAAATGGAGACATGTCATGTTTAACACGGATTGTTTCCTATACAAAAGCAGCTACAAAATTGATTAAGGCAGTTAATGCTACTGAGGTGCAAACTTACATTAGAGTGAGTAGAAAGGAGTTTGCTATACTCGTTAGAGTAAGCACACCTGAGGTACCATATGGGAATACATTTAGGATTGAATTGCTTTACAAGATAATGCCTGGAGGAGAGGTATCTTCTGGAGAGGAATCCTCCCATCTTGTTGTGTCTTGGGGTATTGTTTTCCTCCAAAGCACGATGATGAAAGGCATGATAGAAAGTGGGGCAAGACAGGGATTAAAGGAGAGTTTTAGCCAGTTCTCTGAAAAACTTGCACAGAAGTTTAAGGTGCTAGATAAGGCAGACTTACCTGACAAGGAACAATTTTTAGCAACTTTGCAAACAGAAGACCCGTGGAATTGGTGGCAGTCAATTACATACTTTTGGAATTTCACAGTGGTTTCTACCATTTTCATGTTTTTGTATGTCTTGGTGCATATCTTAAGGTGTGGTCCAACTTTACCTCAGGGCTTGGAATTTAGGGGGCTTGAATTGCCAGATAGTTTTGGAGAGCTAATTGCTAGTGGAATTTTAATCATCCAGTTACAGCGTGTTTACAATATGGTGTCTCACTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTCAAGGTGATGGATGGGTTCTTACTGTGGCTTTAATTGAGGGGGTTGACCTGGCCACCTTGGAGTCAGAAGAGTTGTCAGATCCCTACGTAGTTTTCACGTGTAATGGACAAACAAGGTCAAGCTCTGTCAAGCTTCAAACCTCTGATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCACCATCTGTTTTAGATGTGGAAGTTTTTGATTTTGATGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAGATAAATTTCCTAAAGCACACATCAACTGAGTTGGCAGACATGTGGCTCATGCTAGAAGGAAAACTTGCTCAATCTTCTCAGTCAAAGTTGCACTTGAGAATTTTCTTGGACAATAATAAAGGAGATGAAACAATCAAGGAATATTTGGAGAAGATGGAAAAGGAAGTAGGGAAAAAATTGAATCCTAGATCACCACAACGGAATTCTACATTCCAGAAATTGTTTGGGTTGCCTCCGGAAGAATTTCTCATAAAAGATTTCACCTGTTACCTCAAGAGAAAAATGCCTTTACAGGGTCGGTTGTTTCTTTCAGCAAGGATTCTGGGGTTTCATGCCAATTTATTTGGACATAAAACTAAATTTTTCTTCCTTTGGGAAGACATTGAAGAGATACAAGTGCTTCCTCCGTCACTGGCTACGTTAGGAAGCCCTACATTGGTCATAATTCTGCGAAGAGGTCGTGGTCTTGATGCAAGACATGGTGCAAAGACTCAAGATGAAGAAGGGAGACTAAGGTTTCATTTTCAATCATTTGTTTCATTTAATGCTGCCTCCAGAACAATAAAGGCCTTGTGGAGGACAAGAATACTGAACCCTTATCAGAAAGAACAAGTTACAGAAGAGCATGAAGATCAAGAAGGGTTTCTAATTCCAGAAGACTCTGCTTCTATCCTGGAGGATCAAGAAAAAATGTCCAGAATTTTCTCTGCAGAACTTCCAATCAAGATGAAAATGGTGATGAAAATTTTTGATGGAGGAAACCTGGAGAACAAAATCATGCATAGAACAGGATGTATGAACTATGAAACAACATCCTGGGAACAAGTAAAGCCTGATTTCTTTGAGAGGCGAGTTTCTTACCAATTCAATCGACACGTGTCAGCTTTTGGTGGTGAAGTCACATGCACACAACAAAAATTTCCAAATGCAAACACGGGAGGTTGGACTGTGACAGAAGTTATGGCTCTTCATGGTGTCCCTTTTGCTGATCACTTCCACATTCATTTTAGGTACGAAATTGAGAAATCCTCTCTTGGTGAATGTGCTTGTAAGTGTGAAGCTTATATTGGTATCATGTGGCTCAAGAGCTCTAAGTTTCAGCAGAGAATCAACCGGAACATAACAGCCAAGTTTAACCTTCGATCGAAGGAAATATTTGACCTGGTTCAGAAAGAGATTTTGTTAATGTCTCAGAACTCAAACTCATATGGATAA 3048 0.4052 MLSLYVCVSEAKDLPVKDTFVKLRLGKFKSKTRVLRNTCTPVWNQEFCFGVHDAEDVLFASVVNHDNECRVTNGSVEFVGEVRIPVASVAFEDNQTLLPTWFSLESPKSGKFFNKYCGKILLTVSLQGKGCASLVNHKNSPDSTNAVGHSRDLDGLHISCKATCDKMGGGKQLLKVIANGLQRIFKKKEGNSKSGDSSELSSTLSDYEDIVQESSSPCSFEEAIALMQSGDNKPEMPENLGGDVLVDQIYLVSPNDLNVFLFAPNSQFNKELAELQGTTNVQEGSWTWKNGDMSCLTRIVSYTKAATKLIKAVNATEVQTYIRVSRKEFAILVRVSTPEVPYGNTFRIELLYKIMPGGEVSSGEESSHLVVSWGIVFLQSTMMKGMIESGARQGLKESFSQFSEKLAQKFKVLDKADLPDKEQFLATLQTEDPWNWWQSITYFWNFTVVSTIFMFLYVLVHILRCGPTLPQGLEFRGLELPDSFGELIASGILIIQLQRVYNMVSHFVQARFQMGTDHGLKAQGDGWVLTVALIEGVDLATLESEELSDPYVVFTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVLDVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADMWLMLEGKLAQSSQSKLHLRIFLDNNKGDETIKEYLEKMEKEVGKKLNPRSPQRNSTFQKLFGLPPEEFLIKDFTCYLKRKMPLQGRLFLSARILGFHANLFGHKTKFFFLWEDIEEIQVLPPSLATLGSPTLVIILRRGRGLDARHGAKTQDEEGRLRFHFQSFVSFNAASRTIKALWRTRILNPYQKEQVTEEHEDQEGFLIPEDSASILEDQEKMSRIFSAELPIKMKMVMKIFDGGNLENKIMHRTGCMNYETTSWEQVKPDFFERRVSYQFNRHVSAFGGEVTCTQQKFPNANTGGWTVTEVMALHGVPFADHFHIHFRYEIEKSSLGECACKCEAYIGIMWLKSSKFQQRINRNITAKFNLRSKEIFDLVQKEILLMSQNSNSYG 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00561 1015 CDD C2 529 629 - -
Pste2g00561 1015 ProSiteProfiles C2 domain profile. 1 102 IPR000008 -
Pste2g00561 1015 PANTHER BNAA05G37250D PROTEIN 4 1005 IPR044511 -
Pste2g00561 1015 Pfam VAD1 Analog of StAR-related lipid transfer domain 845 985 IPR031968 -
Pste2g00561 1015 Pfam VAD1 Analog of StAR-related lipid transfer domain 245 394 IPR031968 -
Pste2g00561 1015 SMART C2_3c 528 627 IPR000008 -
Pste2g00561 1015 SMART C2_3c 3 98 IPR000008 -
Pste2g00561 1015 Gene3D C2 domain 2 129 IPR035892 -
Pste2g00561 1015 Gene3D C2 domain 510 647 IPR035892 -
Pste2g00561 1015 ProSiteProfiles VASt domain profile. 241 414 IPR031968 -
Pste2g00561 1015 ProSiteProfiles C2 domain profile. 508 627 IPR000008 -
Pste2g00561 1015 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 527 649 IPR035892 -
Pste2g00561 1015 CDD C2 4 104 - -
Pste2g00561 1015 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 128 IPR035892 -
Pste2g00561 1015 SMART gram2001c 680 746 IPR004182 -
Pste2g00561 1015 Pfam C2 domain 4 104 IPR000008 -
Pste2g00561 1015 Pfam C2 domain 528 627 IPR000008 -
Pste2g00561 1015 Gene3D - 678 805 IPR011993 -
Pste2g00561 1015 ProSiteProfiles VASt domain profile. 841 1004 IPR031968 -
Pste2g00561 1015 Pfam GRAM domain 681 762 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00561 Pste-Chr2 5324478 5333747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00561 1 171 Lipid Metabolism Gene Families AT1G22610 28.571 2.32e-09 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00561 2 5324478 5333747 Pste2g00561 2 5324478 5333747 ECH