Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00257 AAAGAAATCAGGAAAGCATGGTTGTTATTTCCATTTTGATCCATGGGTCTAATGTTTTGACTGCTACTGCTATTACCCTTTGGGGTTGGAGGGAAGCGATAAAAAGGAGCATAAAGCAAATTGATAAGCACCGTAACGGAATTGGAAACGAGCTCAAAAAGCAATACTGGTATCGTCTACGTCTTTGCTACAGCGACTTTGATATTTCCTTAATTTACTTAACATCACTCCATTCGGTAATCTCTTGCGTTAAGGCGGCGCAGGAAAGGGGCAAAATAGTCCGTGCAAGTAAAAAACCCAATGTTGAGTTGGATGGGGTCCGAGGCTACGTGTCACCCGGCTATTCAGGAATCATGGCTAGGGTGTTGGCTCAGTCAATTAATGTCCCTGGTGTAGTGGCTGAGCATAGGCATGGTCAGCAAAAGGGATCGGGAAAATTGAAAAGATCGGCCAAAATGATGAGTGCTTTACGAACAAATGGATTAAGAATGTCAGGTTTCTCTGGACTACGTACCTTTAATCCTTTGGATACTATGTTGAGACCTGGAATAGATTTCCATGCTAAGGTATCCATTGCAACATCTTCACGAAGAGCAAGAGCTACCAGATGTGTACCCAAAGCGATGTTTGAACGTTTCACTGAGAAAGCAATCAAAGTAATAATGCTAGCTCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAGATTCTATTGGGTCTTATTGGTGAAGGCACCGGTATTGCTGCTAAGGTTCTAAAGTCAATGGGGATCAACCTTAAAGATGCACGTGTGGAAGTAGAGAAGATAATTGGAAGGGGTAGTGGATTTGTGGCTGTTGAGATTCCGTTTACTCCTCGTGCAAAGCGTGTTTTGGAACTTTCACTAGAGGAAGCTCGTCAACTTGGTCACAATTATATTGGATCAGAGCACCTGCTTCTGGGTCTTCTCCGAGAGGGAGAGGGTGTAGCAGCACGTGTTTTGGAAAACTTGGGTGCTGATCCAACTAATATTCGCACACAGGCTCGTATTATGCCTTCATTTACTTTTTTCCCACAAACTTCTGTTTGCATGCACAATGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTTACTGCTACTGTTGGTTCAGGAAGTAGTGGCAATAAAATGCCAACTTTGGAGGAGTATGGTACCAATTTGACCAAGCTAGCAGAAGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCAACAAATTGAACGTGTGACTCAAATTTTGGGTCGTCGAACAAAAAATAATCCTTGTCTGATTGGAGAACCTGGTGTTGGGAAGACTGCAATTGCTGAAGGTCTTGCACAGCGGATTGCTAACGGTGATGTACCTGAAACAATTGAGGGAAAAAAGGTTATAACACTCGACATGGGTCTGCTTGTTGCTGGTACCAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGCGACGAGATAATACTTTTTATCGATGAAGTGCACACTTTGATTGGAGCAGGAGCAGCTGAAGGGGCAATAGATGCTGCAAACATACTAAAGCCAGCCCTTGCCAGAGGTGAACTACAGTGTATTGGAGCTACAACTTTAGACGAATACAGGAAGCACATTGAAAAAGATCCTGCTTTAGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAACCAACTGTTGACGAAACCATACAAATACTGAAAGGACTTAGAGAACGATATGAAATTCACCACAAGCTCCGCTATACTGACGAGGCTCTTGTAGCAGCTGCACAGCTGTCACATCAGTATATCAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCACGAGTCAGGCTTCAGCATGCACAGTTACCTGAAGAAGCAAGAGAACTTGACAAGGAGGTCAGGCAGATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGATTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATCTTAAGGCACAGATCTCAACACTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAAAGTGAGGCAGGGGATGCTGGTCCTATTGTGACTGAAGCTGACATACAACATATTGTCTCTTCCTGGACTGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACATAAGCGAGTCATTGGTCAGGATGAAGCAGTAAAGGCCATTAGTCGGGCTATCCGTCGAGCTCGGGTTGGATTGAAGAACCCTAATCGTCCAATTGCAAGCTTCATCTTTTCGGGTCCAACCGGTGTGGGAAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAAGCTATGATTCGACTTGACATGAGTGAATTTATGGAAAGACATACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACCGAAGGTGGTCAATTGACTGAGGCAGTTCGCCGTCGTCCTTACACTGTTGTACTGTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAGGATGGGAGACTAACAGACAGTAAGGGAAGAACCGTTGATTTCAAAAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGGCGACGAATTGGATTTGATCTGGACTATGATGAGAAGGATAGCAGTTATAACAGAATCAAGAGCTTGGTGACTGAGGAGTTAAAACAGTACTTTAGGCCAGAATTTTTGAATAGGTTGGATGAAATGATTGTCTTCAGGCAACTCACAAAATTGGAGGTGAAGGAGATTGCTGACATAATGCTCAAAGAGGTGTTTGATAGACTAAAGGTGAAAGATATTGAACTTCAGGTGACAGAAAGATTTAGGGACAGAGTGGTTGAGGAAGGCTATAATCCTAGTTATGGAGCTAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGCGACTCTGTTATAGTGGATGTTGACTCTGACGGTAATGTGATTGTTCTCAATGGTAGCAGCGGAGCCCCCGAGTCCTTACCAGAGGCACTTCCTGTA 3176 0.4377 MVVISILIHGSNVLTATAITLWGWREAIKRSIKQIDKHRNGIGNELKKQYWYRLRLCYSDFDISLIYLTSLHSVISCVKAAQERGKIVRASKKPNVELDGVRGYVSPGYSGIMARVLAQSINVPGVVAEHRHGQQKGSGKLKRSAKMMSALRTNGLRMSGFSGLRTFNPLDTMLRPGIDFHAKVSIATSSRRARATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQARIMPSFTFFPQTSVCMHNVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISTLVEKGKEMSKAESEAGDAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKVKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPEALPV 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00257 1053 Coils Coil 636 656 - -
Pste2g00257 1053 Gene3D - 374 566 IPR027417 -
Pste2g00257 1053 PANTHER ATP-DEPENDENT CLP PROTEASE 208 1033 - -
Pste2g00257 1053 CDD AAA 406 558 - -
Pste2g00257 1053 ProSiteProfiles Clp repeat (R) domain profile. 204 346 IPR004176 -
Pste2g00257 1053 Gene3D - 718 944 IPR027417 -
Pste2g00257 1053 SMART AAA_5 766 947 IPR003593 GO:0016887
Pste2g00257 1053 SMART AAA_5 423 563 IPR003593 GO:0016887
Pste2g00257 1053 SUPERFAMILY Double Clp-N motif 205 338 IPR036628 -
Pste2g00257 1053 Gene3D - 203 344 IPR036628 -
Pste2g00257 1053 Pfam AAA domain (Cdc48 subfamily) 765 939 IPR003959 GO:0005524|GO:0016887
Pste2g00257 1053 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 844 862 IPR001270 GO:0005524
Pste2g00257 1053 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 815 833 IPR001270 GO:0005524
Pste2g00257 1053 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 877 891 IPR001270 GO:0005524
Pste2g00257 1053 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 770 788 IPR001270 GO:0005524
Pste2g00257 1053 Coils Coil 477 497 - -
Pste2g00257 1053 ProSiteProfiles UVR domain profile. 640 675 IPR001943 GO:0005515
Pste2g00257 1053 Pfam Clp amino terminal domain, pathogenicity island component 218 270 IPR004176 -
Pste2g00257 1053 Pfam Clp amino terminal domain, pathogenicity island component 294 339 IPR004176 -
Pste2g00257 1053 SMART ClpB_D2_small_2 946 1036 IPR019489 -
Pste2g00257 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 1033 IPR027417 -
Pste2g00257 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 662 IPR027417 -
Pste2g00257 1053 ProSitePatterns Chaperonins clpA/B signature 2. 800 818 IPR028299 -
Pste2g00257 1053 CDD RecA-like_ClpB_Hsp104-like 727 943 - -
Pste2g00257 1053 Gene3D UVR domain 632 696 - -
Pste2g00257 1053 Pfam AAA lid domain 566 667 IPR041546 -
Pste2g00257 1053 Pfam C-terminal, D2-small domain, of ClpB protein 946 1026 IPR019489 -
Pste2g00257 1053 FunFam ATP-dependent Clp protease subunit 719 944 - -
Pste2g00257 1053 FunFam ATP-dependent Clp protease ATP-binding subunit 567 652 - -
Pste2g00257 1053 FunFam Chaperone clpB 1, putative 374 566 - -
Pste2g00257 1053 Gene3D - 568 712 - -
Pste2g00257 1053 Pfam ATPase family associated with various cellular activities (AAA) 428 544 IPR003959 GO:0005524|GO:0016887
Pste2g00257 1053 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 203 345 - -
Pste2g00257 1053 ProSitePatterns Chaperonins clpA/B signature 1. 518 530 IPR018368 GO:0005524
Pste2g00257 1053 FunFam ATP-dependent chaperone ClpB 946 1039 - -
Pste2g00257 1053 Gene3D - 946 1043 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00257 Pste-Chr2 1640201 1647269 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00257 2 1640201 1647269 Pste2g00257 2 1640201 1647269 ECH
Pste3g01270 3 8018356 8023925 Pste2g00257 2 1640201 1647269 PCT