Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03731 TTCTTCGTATGCAGAGTTGTAGTTAGACACATTGTTGTGTTCTTCCATTTCCCACTTCAACTTTGCAAACCAACTCAAAACGCGTTTTAAGAAGGAAGCAACAATTGAGCAGCAAAACAAACACACTCATTTCCGACCTCGTTGCAGAGCTTAGATGCGCGCCCCCACCGTAAGAAACCTATGCACCCTCAGCTCCTTGTTCCACTCCAAGTTGTTAGTCCGCCAACCTAACGCCAACGTTGCCCCCTTCACAAAATCTTCTTCTGAATCCGAAGACGAACTGCACCTCTCCTCGGAGCTCGACCTGGCTCGTGACTCTTCCCCAGGGGATTCGGTTGACCAAGATGGGGATAATTCTGAGCTTTCTGCTATATTGTGCGCTAATCAGGGCAAGAAGACTGGTTCAGAGGTAATTGATGATGACGAAGAAAAAAGGAAAAGTGCTTTAGAGATACCTTGGATGCCAGAACTGTCTCATGGAAATTTGTTGGTGAAACGGAAGGAGGTAGCACGTGAGAGGAAACGAAAATGGATTTTTAAATACACGAATGAAGATCGTTTTGACAGGTTAATTAAATTGTGCGCAGATAAACTAGGAACAGGAAAGACAGTTACTGTGTTTGGTCACTTGGGTCGAGAAACAGGTATGAAAGAGTACAATGCATTGATAAAAACGTGCATAAACAAGGCTAGGGCGACTGCCAACAAAAGCACTGCCTTAAGAGAAATGAGTAAGGCTTTTCACCTTTTTAAATCAATGAGGGATCTTGGGTATCCAGTAAAAGAGAAAACGTACGGTCCACTTCTTCAGTATCTAGTTGATATGGGTTTGGTTCAAGAGTTTCAACTTTTCTCTGATATTATCAAAGCTGAGAACCCTTGTTCAGCTTCACAATTGGGTTACTATGAAATGTTGCTGTGGTTGAGAGTTGATGATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATGGAGAAGACACTTGTGCTTTAAGAGAAAGTTACTTGATGGCTCTTTGTGAAAGTGGTGGGAAGATGCAGATTTTGGATGTGGTGAAGAATATAGACATCACAAAGCTTTCATCTGCAAAATCTATTGCATATATTTTCCAATCATTAGGCAGGCTCCAGTTGGAATCTGTTGTGGATGATTTACTTTTGGATTTGATAACACGTGATCATGATGCAGATGATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATTCCAAATTTAGTGGTTGAGGATATCGTCCCAAAAGTCAAGAATATGCATGAATTACTGGAAGTGTTGCCTTCATCCTCATCATATGTAAAGCTCATTTTGCATTGTTGTAGATTAGACAAGTTTGAAGGTGCATACAAGATCATTGGTGACTTGGAGGAAATGAATTTCAAACCTACAACAAACATGTACAATGCTATAATGGCAGGATGTTTTCGAGAGAAGAACATCACAGGTGGGTTGAGAGTCCTCAAGAGCATGCAAGATGCCAAAATAAAACCTGATTCTCAGACCTTCTGCTATTTGATTAGCAATTGTGAAACAGAAGAGGATATAATCAAGTACTGTGAAGAAATGAAACAATCTGGAGTCCAAGCTACAAAACAAGTTTTTATGGCCCTTATCAATTCATACGCAGCTTGTGGAGAATTGGAGAAGGCAAAACAGGTAGTTTTAGATCCAAACATACCAATCAAGAACTTAAATGAAATCAAGAGTGTACTTGTCTCCGCTCTTGCATCACACGGGCAATTGTCTGAGGCTCTTCTTATATATGAGGAGATAAAGAAATCTGGACATAATTTGGAGCCAAAAGCTGTTATTACTCTGATTGAGACTTTCAGTCAATTCAATGGGGAGTTGGATGGAGTGCTGCTTCTACTTGAGGAAGTGAGTGATCTAGACTATTGGGTTGATGCTTGCTTCAAGGTTATCATGTACTGTATACAGAACAAGAATTTGAGTTGTACTATTCTATTGTTCAAACAACTTAAGGACAAGTTCGAAAATGAGGAAATAGTAATGGAAGCTCTCTTCGATGCAGTATTTTCTCTAATTGCAGCATCTGAGTCCACTCATTTACAGATTGGCCTGGACTTGCTTTGGGCGATAAAGGATGAGCTTGGCGTTATGCCTTCCCGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTAGAGATTTGAATAATGCTCGCTTGATTTGGAGAGAATATGAGGTTGCTGGATTTCCTTACAATGTATTAAGTTACTTGAGAATGTATCAGGCACTTTTGGCTGCAGGCGATGATAGATCCGCTCAGTTTATGCTTAGGAAAATTCCACAAGATGATGCCGAGGTTTGTTCTGTCATCATAGCATGTCAGAAAACATATAGTAATCTTAATTCTTTAAAAGAGAAGAAAAAGGAAGGAAAAAGAAAAAAAGAAAGAAAAGAAAAGCAAGACTTGAATACTAGTTCCAGTGAATTTGAATAA 2497 0.3957 MRAPTVRNLCTLSSLFHSKLLVRQPNANVAPFTKSSSESEDELHLSSELDLARDSSPGDSVDQDGDNSELSAILCANQGKKTGSEVIDDDEEKRKSALEIPWMPELSHGNLLVKRKEVARERKRKWIFKYTNEDRFDRLIKLCADKLGTGKTVTVFGHLGRETGMKEYNALIKTCINKARATANKSTALREMSKAFHLFKSMRDLGYPVKEKTYGPLLQYLVDMGLVQEFQLFSDIIKAENPCSASQLGYYEMLLWLRVDDEEMIRDICEYITVEDGEDTCALRESYLMALCESGGKMQILDVVKNIDITKLSSAKSIAYIFQSLGRLQLESVVDDLLLDLITRDHDADDISNFIVSYAVSIPNLVVEDIVPKVKNMHELLEVLPSSSSYVKLILHCCRLDKFEGAYKIIGDLEEMNFKPTTNMYNAIMAGCFREKNITGGLRVLKSMQDAKIKPDSQTFCYLISNCETEEDIIKYCEEMKQSGVQATKQVFMALINSYAACGELEKAKQVVLDPNIPIKNLNEIKSVLVSALASHGQLSEALLIYEEIKKSGHNLEPKAVITLIETFSQFNGELDGVLLLLEEVSDLDYWVDACFKVIMYCIQNKNLSCTILLFKQLKDKFENEEIVMEALFDAVFSLIAASESTHLQIGLDLLWAIKDELGVMPSRQCLDFLLSACANARDLNNARLIWREYEVAGFPYNVLSYLRMYQALLAAGDDRSAQFMLRKIPQDDAEVCSVIIACQKTYSNLNSLKEKKKEGKRKKERKEKQDLNTSSSEFE 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03731 780 NCBIfam pentatricopeptide repeat 424 457 IPR002885 -
Pste1g03731 780 Gene3D Tetratricopeptide repeat domain 367 594 IPR011990 GO:0005515
Pste1g03731 780 Gene3D Tetratricopeptide repeat domain 595 779 IPR011990 GO:0005515
Pste1g03731 780 MobiDBLite consensus disorder prediction 31 67 - -
Pste1g03731 780 PANTHER OS02G0132600 PROTEIN 401 763 - -
Pste1g03731 780 MobiDBLite consensus disorder prediction 37 60 - -
Pste1g03731 780 Pfam PPR repeat 492 511 IPR002885 -
Pste1g03731 780 Pfam PPR repeat 528 553 IPR002885 -
Pste1g03731 780 Coils Coil 750 780 - -
Pste1g03731 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Pste1g03731 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Pste1g03731 780 MobiDBLite consensus disorder prediction 754 780 - -
Pste1g03731 780 Pfam PPR repeat family 420 467 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03731 Pste-Chr1 18191095 18210992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03731 383 714 Glycosyltransferase AT1G05670 21.849 6.15e-12 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03731 1 18191095 18210992 Pste1g03731 1 18191095 18210992 ECH