Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03622 AAGCAGAATGGTGTTCCCGAAACCTGGTTGCGTTTCCACAACGAGGTTTCTGTCTTGTTCTTCGAGCCTGATTGGCGAGAAAGCGATTGTGTACCTAAAACGGCACCCTGAAATGCTCCGATCACTCTCTCCTGACTTCACTCCCGAAGCAGCCTCCTACGTTCTCGTCTCCTCCCAATCCGACCAACGCACCCTCGTCAATTTCCTGAAGTGGGCCGAGGCCCAGGATTTACTGACCCCCCAGTGCAAGTGTCTGGCCCTCCACCTCCTCTCCCGCTTGAAGCTCTTCTCCAGGGCCCACGCCCTGGCCGCCACTCTCCCCGACCTCTCGGCCGCCGAGCTCTTCGGCCACCTGCTGGACACCCACCACCTCTGCCACGCCCCCTCCTCCGCCGCCTTCGACCTCGTCGTCAAATCCCTCTCCCGCCTCAGATCCCCCCACAAAGCCCTCAGCCTCCTTCGCCTCGCCAACCGCCACGGCTTCTCCCTCTCCGTCCTCTCCTACAATGCCATCCTCCACGCCCTCCTCTCCCTCCATTCCTCCTTCTCCCACGCTCAACGCTTCTTCCTCGAAATGCTCCAAAACGGCGTCTCCCCCAACGTCTACACTTATAACCTCATCATCCGCGCCCTCGCCTCCCGGGCCCACTTCCACACTGCCTTCGCCTTTCTGCGCCACATGCAAAACCAAGGCATTTCTCCCAACGTCGTTACCTATAACACGTTAATCCACGCCCATTGCAAGAACAGGAACGTCAATCATGCCATCCACCTCCTCCGAGCCATGCCCGCCACTGGCGTTTCCCCCAATTTGATTTCTTATAATTCCGTCCTTAATGGCTTGTGTGCTGAAGGCAGAATGCGTGAGGTTCACGAGCTTGTTCACGACATGGCTACCAACGGCTTTCTTCCTGATGCGGTTACTTATAATACTCTTGTTAATGGCTTTTGCAAAGACGGCAATTTTCACCACGCTTGTCTCCTTCTTTCAGATATGCTTGGGAAGGGTTTGTCTCCCAATGTTGTTACTTATACTACTTTGATTCATTCTATGTGTAAGGCTGGCAATTTGATTCGTGCCATTCACATTTTCTATCAAATGCGTTTTAGAGGTCTGTGGCCCAATGAGAGGACTTACACTACTATCATTGATGGCTTCTGCCGCCAAGGGTTCATGTACGAGGCTTATAAGGTCTTGAGCCAGATGATTGTTACTGGCTTTTCGCCTTCCATTGTCACGTACAATGCACTTGTCCATGGATATTGCTTTTTGGGGAGAATTGAGGACTCTGTCGGAATTTTGAGGAGGATGCTTGAGAGAGGCTTGTCTCCTGATGTTGTTAGTTATAGCACTGTTATAGCCGGCTTTTGCCGAGAGCGCGAGTTGGTGAAAGCGTTTCAGATGAAGGAGGAGATGGTCGAGAAGGGTGTCTTGCCTGATGCCGTTACCTATTCTTCTCTCATACAAGGTCTTTGTCTGCAGCACAAACTGGTGGAAGCTTTTGATTTGTTCCAAGAGATGGTGCTTAGGGGTCTCCCGCCTGATGAGTTTACTTATACTAGTTTGATAAATGCTTATTGCATCCAGGGTGAGTTGAGTAAGGCTATTCGTTTGCATGATGAAATGATGCACAAGGGTTTTCTGCCTGATGATGTTACCTATAGCGTGCTTATCAACGGGCTTAATAAGAAAGCTAGGACAAAAGAAGCAAAGAGGCTTCTGCTAAAGTTGTTTTATGAGGAGTCTGTACCAAACGATGTGACGTACAATACGCTGATACAAAATTGCTGTAATAATGAATTTAAGACTGTTGTAGGTCTTGTTAAAGGATTCTGCATGAAGGGTTTGATGAATGAAGCAGATCGGGTTTTTAAGACAATGCTTCGAAGGAGTCATAAGCCTAATGCTACAATTTATAATTTACTCATACATGGACATTGTAGAAGTGGGAATGTTCGCAAGGCATATGATTTGTATTTGGAGTTGGAGCGTGGTGGTTTTGTTTCTCATACAGTGACTGTGATTGCTCTCACTAAGGCACTGGCTAGGGAAGGGATGAATGATGAGCTGAGTCGGGTATTACAGAACGTATTGAGGAGCTCTAAGCTCAATGAAGCTGAGGGAGCTAAAGTACTTGTTGACATTAACTTTAAAGATGGTAACATGGATGCTGTTTTGAATGTGCTAACTGAAATGGCCAAGGATGGCCTGCTACCTGACAGTGGAATGCATTCATATGCTCCAGCAAACCACCTTCTTGACCAGGCAAGATCTCTTATTTCAAGGGTAACTGAGGAGAGGAATTCTGTTATTGACCAAATCAAAAGACTTCTGCAAGAACTGATTTCTTGTGGTTGCAAGATACAACTCAGCAGAATTGGT 2383 0.4822 MVFPKPGCVSTTRFLSCSSSLIGEKAIVYLKRHPEMLRSLSPDFTPEAASYVLVSSQSDQRTLVNFLKWAEAQDLLTPQCKCLALHLLSRLKLFSRAHALAATLPDLSAAELFGHLLDTHHLCHAPSSAAFDLVVKSLSRLRSPHKALSLLRLANRHGFSLSVLSYNAILHALLSLHSSFSHAQRFFLEMLQNGVSPNVYTYNLIIRALASRAHFHTAFAFLRHMQNQGISPNVVTYNTLIHAHCKNRNVNHAIHLLRAMPATGVSPNLISYNSVLNGLCAEGRMREVHELVHDMATNGFLPDAVTYNTLVNGFCKDGNFHHACLLLSDMLGKGLSPNVVTYTTLIHSMCKAGNLIRAIHIFYQMRFRGLWPNERTYTTIIDGFCRQGFMYEAYKVLSQMIVTGFSPSIVTYNALVHGYCFLGRIEDSVGILRRMLERGLSPDVVSYSTVIAGFCRERELVKAFQMKEEMVEKGVLPDAVTYSSLIQGLCLQHKLVEAFDLFQEMVLRGLPPDEFTYTSLINAYCIQGELSKAIRLHDEMMHKGFLPDDVTYSVLINGLNKKARTKEAKRLLLKLFYEESVPNDVTYNTLIQNCCNNEFKTVVGLVKGFCMKGLMNEADRVFKTMLRRSHKPNATIYNLLIHGHCRSGNVRKAYDLYLELERGGFVSHTVTVIALTKALAREGMNDELSRVLQNVLRSSKLNEAEGAKVLVDINFKDGNMDAVLNVLTEMAKDGLLPDSGMHSYAPANHLLDQARSLISRVTEERNSVIDQIKRLLQELISCGCKIQLSRIG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 197 IPR002885 -
Pste1g03622 792 Pfam PPR repeat 605 628 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Pste1g03622 792 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 320 595 - -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Pste1g03622 792 Pfam PPR repeat 629 656 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 445 479 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 480 514 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 270 304 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 636 666 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 305 339 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 605 634 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 410 444 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 235 268 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 340 370 IPR002885 -
Pste1g03622 792 NCBIfam pentatricopeptide repeat 515 548 IPR002885 -
Pste1g03622 792 Gene3D Tetratricopeptide repeat domain 127 296 IPR011990 GO:0005515
Pste1g03622 792 Gene3D Tetratricopeptide repeat domain 602 713 IPR011990 GO:0005515
Pste1g03622 792 Gene3D Tetratricopeptide repeat domain 297 404 IPR011990 GO:0005515
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Pste1g03622 792 Gene3D Tetratricopeptide repeat domain 469 541 IPR011990 GO:0005515
Pste1g03622 792 Gene3D Tetratricopeptide repeat domain 405 468 IPR011990 GO:0005515
Pste1g03622 792 Gene3D Tetratricopeptide repeat domain 542 601 IPR011990 GO:0005515
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Pste1g03622 792 Pfam PPR repeat family 442 490 IPR002885 -
Pste1g03622 792 Pfam PPR repeat family 232 280 IPR002885 -
Pste1g03622 792 Pfam PPR repeat family 162 210 IPR002885 -
Pste1g03622 792 Pfam PPR repeat family 302 351 IPR002885 -
Pste1g03622 792 Pfam PPR repeat family 517 560 IPR002885 -
Pste1g03622 792 Pfam PPR repeat family 372 420 IPR002885 -
Pste1g03622 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Pste1g03622 792 Coils Coil 758 778 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03622 4 739 Glycosyltransferase AT1G05670 28.802 8.71e-105 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03622 1 17237806 17245788 Pste1g03622 1 17237806 17245788 ECH