Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03505 ATGGTACTGATCACTGCACCGGTGCCAACAGTACCTTCCCACCACCTATTGTTCGATGAAAACGTTGATTTAAAGAACATGAACCCACGCACTTTACCTTCTCCCCAGCATCAACTCGAGCTTCGACCGCCCCTGCGCCATCCCATTCATAGCTCCCCACAAGCCCTTACTCCTCTAACAACCACTTTCACTAAGAAGAAGAAAAATAACAGAAAAGGGACCACTACCTCTGACATATTGCACTTGATGGACGCTCTACCCTTTCCCGTACCCATTGACATCTACACCTCTCTCATTAAAGAGTGCACTGTTTCCGGTGACCCAGAAACTGCCATTGAGTTGTTTACCCACATTTCCAAGAGCGGCATCAAACCCCCCTTGCCCTTCCTCAACCGGATCCTCATCCTGTTTGTCTCCTGCGGTCTGTTAGATGATGCACGCCATATGTTTGACAAAATGCGTCTTAGGGACTTCAACTCTTGGGCAACCTTGTTTGTTGCGTACTATGATGCTGCCCATTACGACGAGGTTACAACTGTTTTCTTCAACATGTTGTGCCAATTGGATGTGTTGCAATTTCCTCCTTGGATATGGCCTTGCCTTCTCAAGGCTTGTGCCTGCACTGAGAATGTCCCTTTGGGAATCCAAGTTCATGGATGGTTGTTAAAGTTAGGTGCTTGTGATCACGTGCTTATTAGCAGCTCCTTGATAAACTTTTATGGGAGGTTCACATCTTTAGAAGATGCAAGTGCTGTCTTCAATGGGCTGTCACGACATAACACCTTGACTTGGACGGCGAAAATTGTCAGTGGCTGCAGGGAAAGGCATTTCTCTCTGGTTTTTGGCGATTTCAAGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTTACGTTTTCTAGTGTTCTCAAGGCATGTGGAAAGATGCAGAATCGGGAACGATGCGGTGAGCAAGTTCATGCTGATGCTATTAAACTTGGGTTTGTCTCAGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGCGGGTTATTGAGAGACGCAAAATCGATGTTTGAGATGACCCGTAAAGAGAGAAAAGTTGATTGTTGGAATGCTATGCTTATGGGTTACATACAGAATGGTTTGTACAATGAAGCTGTTAAGTTTCTGTATCAGATGCAGGCAGCTGGAATGCAGACCCGGGAATCTTTGCTTAAAAAATTAAGAATTGCTTGTGGAAGTATTAATTACTCCGACATGAATTAA 1257 0.4511 MVLITAPVPTVPSHHLLFDENVDLKNMNPRTLPSPQHQLELRPPLRHPIHSSPQALTPLTTTFTKKKKNNRKGTTTSDILHLMDALPFPVPIDIYTSLIKECTVSGDPETAIELFTHISKSGIKPPLPFLNRILILFVSCGLLDDARHMFDKMRLRDFNSWATLFVAYYDAAHYDEVTTVFFNMLCQLDVLQFPPWIWPCLLKACACTENVPLGIQVHGWLLKLGACDHVLISSSLINFYGRFTSLEDASAVFNGLSRHNTLTWTAKIVSGCRERHFSLVFGDFKEMGMRGVKKDCFTFSSVLKACGKMQNRERCGEQVHADAIKLGFVSDHYVQCSLIAMYGRCGLLRDAKSMFEMTRKERKVDCWNAMLMGYIQNGLYNEAVKFLYQMQAAGMQTRESLLKKLRIACGSINYSDMN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03505 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Pste1g03505 418 Pfam PPR repeat 337 358 IPR002885 -
Pste1g03505 418 Pfam PPR repeat 366 394 IPR002885 -
Pste1g03505 418 Gene3D Tetratricopeptide repeat domain 62 193 IPR011990 GO:0005515
Pste1g03505 418 NCBIfam pentatricopeptide repeat 366 395 IPR002885 -
Pste1g03505 418 NCBIfam pentatricopeptide repeat 94 125 IPR002885 -
Pste1g03505 418 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 315 416 - -
Pste1g03505 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Pste1g03505 418 Gene3D Tetratricopeptide repeat domain 319 411 IPR011990 GO:0005515
Pste1g03505 418 Gene3D Tetratricopeptide repeat domain 196 318 IPR011990 GO:0005515
Pste1g03505 418 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 410 IPR046960 GO:0003723|GO:0009451
Pste1g03505 418 Pfam Pentatricopeptide repeat domain 79 137 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03505 Pste-Chr1 16418439 16419695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03505 287 414 Glycoside Hydrolase AT3G49170 29.771 4.93e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03505 1 16418439 16419695 Pste1g03505 1 16418439 16419695 ECH