Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02947 CTGTAGTTATGTCGATCCATATCTTATATGGGAAGTAATCCTATATAAGACCAAAGCAAACTTCAGACGAAGGCACATCAGATAATTAAGCAATTAAGTTGAACACTCTTAAACATCTAACTCATGGCTAGTGTTTCGTCGGTCTCAGCTTCTATTAGAAGTAGAACTTGCCATAACATAAAGCGCTTGCCATGCAGGCTTGAGGGGAAAGTAGCTATTATCACAGGTGGTGCGAGTGGCCTTGGTGCAGCAACTGCAAGACTTTTCTCTAAGCATGGAGCACACATTGTAATAGCTGATATTCAAGACGAGCTGGGTGTTTCTGTTTGCAAGGAGTTAGAATCTGGTTTCTTTGTCCATTGCGATGTGACAAAGGAAGAGGACGTTGAAAACTGCGTGAACACAACGGTTTGCAAGTATGGAAAACTAGACATCATGTTTAATAACGCTGGTATATGTGATGAGATAAAAACAAGCATACTTGACAACAGCAAGTGTGATTTTGAGAGAGTGATAAGTGTGAATTTGGTTGGACCTTTTCTGGGAACAAAGCACGCTGCAAGGGTGATGATCCCTGCAAAAAGAGGTTGCATAATTAACACTGCCAGTGTTGCTGGATGCATTGGTGGAGGCCTTACACATGCCTACACAAGTTCAAAGCATGCCCTAGTGGGACTGACCAAAAACTGTGCGGTGGAGCTTGGACAGTTTGGTATTCGGGTAAATAGTTTATCCCCTTATCTGGTTGTCACACCTTTAGCTAAGAAGATCTTCAACGTTGATGAAGACAACATCGGTGACATATATTCCAACCTAAAAGGTGTTCATCTGGTGCCTAACGATGTGGCCGAAGCTGCTCTTTATTTGGCAGGTGAAGAATCCAAGTATACTAGTGGTCATAACCTCGTGTTAGATGGAGGGTACACTGTTGTAAATGCCGGATTTAGTGTTTGGAGTCCATCTGAGTAA 969 0.4252 MASVSSVSASIRSRTCHNIKRLPCRLEGKVAIITGGASGLGAATARLFSKHGAHIVIADIQDELGVSVCKELESGFFVHCDVTKEEDVENCVNTTVCKYGKLDIMFNNAGICDEIKTSILDNSKCDFERVISVNLVGPFLGTKHAARVMIPAKRGCIINTASVAGCIGGGLTHAYTSSKHALVGLTKNCAVELGQFGIRVNSLSPYLVVTPLAKKIFNVDEDNIGDIYSNLKGVHLVPNDVAEAALYLAGEESKYTSGHNLVLDGGYTVVNAGFSVWSPSE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02947 281 CDD secoisolariciresinol-DH_like_SDR_c 25 268 IPR045309 GO:0016616
Pste1g02947 281 FunFam Short-chain dehydrogenase reductase 14 272 - -
Pste1g02947 281 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Pste1g02947 281 PRINTS Glucose/ribitol dehydrogenase family signature 231 251 IPR002347 -
Pste1g02947 281 PRINTS Glucose/ribitol dehydrogenase family signature 30 47 IPR002347 -
Pste1g02947 281 PRINTS Glucose/ribitol dehydrogenase family signature 175 194 IPR002347 -
Pste1g02947 281 PRINTS Glucose/ribitol dehydrogenase family signature 196 213 IPR002347 -
Pste1g02947 281 PRINTS Glucose/ribitol dehydrogenase family signature 100 111 IPR002347 -
Pste1g02947 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Pste1g02947 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 194 IPR002347 -
Pste1g02947 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 100 111 IPR002347 -
Pste1g02947 281 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 21 271 - -
Pste1g02947 281 Pfam Enoyl-(Acyl carrier protein) reductase 35 268 - -
Pste1g02947 281 Gene3D - 19 277 - -
Pste1g02947 281 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 270 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02947 Pste-Chr1 12810405 12811465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02947 24 269 Acyl Lipid Metabolism Gene Families AT3G55290 31.660 2.35e-29 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02947 1 12810405 12811465 Pste1g02947 1 12810405 12811465 ECH