Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02922 AGAGAAAATTCTCTTCTCCCTGATCTTCTGGAAACTTCTTCGCCCATGGCGATCTTCTACGCTTTGGTGGCCAGAGGCACGGTCGTCCTGGCGGAGTTCAGCGCCGTCACCGGCAACACCGGCGCCGTCGCCCGCCGCATCCTCGAGAACCTTCCTCCCGACTCCGACTCCAGGCTCTGCTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAGGAGAATCCCTTTCTCATACTTGGAAGATATTCAAATGAGGTTTATGAAGAACTACAGTAGAGTTGCCAATTATGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAGATGGAATTTTTTTCTAGTAATCCGAATGCCGATACCCTCAATCGTGTGAGGGGTGAAATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGATAAGACTGCAACAATGCAAGACAGTGCATTTCACTTTAGAAAACAGTCAAAGCGCCTTCGTAGAGCTCTTTGGATGAAAAATTTTAAACTCCTGCATCACTCTGCCGTCTTGCAGATCCTCCTAATTATCACTCCAGAGTTTATTTATATTCTGAACTCTGAAACTATCAAGATCGTTCCTGTCAATATGTACATTGGAGGACACTTTAGAAATCCAGATTCAAATTATGAGCTGAGTGGAAAAATTTGA 765 0.4523 RENSLLPDLLETSSPMAIFYALVARGTVVLAEFSAVTGNTGAVARRILENLPPDSDSRLCFSQDRYIFHILRSDGITYVCMANDTFGRRIPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSSNPNADTLNRVRGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNFKLLHHSAVLQILLIITPEFIYILNSETIKIVPVNMYIGGHFRNPDSNYELSGKI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02922 254 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 138 198 IPR042855 -
Pste1g02922 254 Pfam Synaptobrevin 147 215 IPR042855 -
Pste1g02922 254 CDD R-SNARE 140 196 - -
Pste1g02922 254 SUPERFAMILY SNARE-like 18 133 IPR011012 -
Pste1g02922 254 CDD Longin 19 133 IPR010908 -
Pste1g02922 254 ProSiteProfiles Longin domain profile. 22 126 IPR010908 -
Pste1g02922 254 FunFam Vesicle-associated membrane protein 714 16 139 - -
Pste1g02922 254 Pfam Regulated-SNARE-like domain 44 123 IPR010908 -
Pste1g02922 254 Gene3D - 138 202 - -
Pste1g02922 254 Gene3D Longin domain 4 137 - -
Pste1g02922 254 FunFam Vesicle-associated membrane protein 7 139 223 - -
Pste1g02922 254 ProSitePatterns Synaptobrevin signature. 156 175 IPR001388 GO:0016020|GO:0016192
Pste1g02922 254 SUPERFAMILY SNARE fusion complex 140 200 - -
Pste1g02922 254 SMART Longin_2 43 125 IPR010908 -
Pste1g02922 254 PANTHER SNARE PROTEINS 16 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02922 Pste-Chr1 12628341 12632106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02922 16 222 Miscellaneous Gene Families AT5G22360 80.095 5.80e-121 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02922 1 12628341 12632106 Pste1g02922 1 12628341 12632106 ECH