Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02556 GCAAGGGTACAGGGAGTGGTGGCTGGAGAAGGCGGCGAGAGTAGATCCGCTGTGATTGGATTGTGGGAAGTATTGAGGTCTCAACTTGTCCTCTCTACAAACTTATTCTCGCACAGTCACCGTTGCTTTCATCACATCCACAAAGTTGACCCCTTTTTATTCCATATCCACACTCAATTTTCTGTCCCATTTGCACAGTTTAACTCTTCTTATTCAACCAAGGGTCCTTCAAGATCTTACAGAAGAAGAGCTCGAAAGAGGTTGTTGAAGTCCTCCAAGCCTACCCTAGACCAAACCCAATTTCAGCATGCACAGTCCCAACTTCCCCCAAGGTTCACCCCTGAAGAACTCTGCAATGTCATCCGTCGTCAAGGTGACCCCTTAGTTTGCTTAGAACTGTTTCACTGGGCATCTCACCAGCCCCGGTTTCGGCACGATGTGTCCACATTTCATGTCGTCATAAACAAGCTTGGAGCTGCAAAGATGTACCAAGAAATGGATGACATTGTGAGTCAGTTGCTTGCTGTTCCTTTAATCGGTTCAGAGCCATTGTTCAACTCGGTTATATATTATTTCACCCAGGCACGGAAGTTGACTAGGGCTGTCAATGTCTTTAAGCACATGAAAAGTAGTAGGAATTTGAATTGCTCCTTTAGGCCTTCTGTTAAAACCTATAACATTCTTTTTGCTGCCTTTTTGGGTAGAGGAAGCAACTCCTACATAAACCACGTGTATATGGAAACAATTAGATGTCTTTTCAGGCAAATGGTCAATGATGGGGTCAAACCTGATATTTTTTCATTGAATTCTATGATCAAAGGTTATGTGCTATCTCTTCATGTTAATGATGCATTGAGGATATTTCACCAGATGGGTGTGGTTTATGATTGCCAGCCCAATGCATTAACATATGATTGCTTGATTCATGGCTTGTGTGCCCAAGGCAGAACTAATAATGCCAAAGAATTATGTTATGAAATGAAGACCAAAGGTTTTGTTCCAAGCAGTAAATCTTATAACTCCCTTGTCAATTCTTTGGCACTCGGTGGAGAGATTGAAGAGGCAGTACATTATCTGTGGGAGATGACTGATAAGCAAAAGTCACCTGACTTTATTACATATAGGACTGTGCTGGATGAGATATGTAGACGAGGAACGATTCAGGAGGGCATGAGGTTTTTGCAGGAACTGCAAGAAAAGGACCTTGTAGATGGGTATGCCTACAGGAAGCTTCTGTATGTGCTTGACGATGACTATGGGAATTCAGTAAGCAGGAATATGGGATTTCACTGTCATTATGACAGTCAACTGCGACCATGCTACCACTTTTTAGGGAGGGGAGGGGTATCCCACCCTTTCTGTAATGCATATATGGGGAGAAAAGGCAGAAAAAGGTGATTTTAGTACATTCCTAAGTTACATATCAAGTTTATTTGATAGAGAGGGGCTATGAAGG 1456 0.4265 ARVQGVVAGEGGESRSAVIGLWEVLRSQLVLSTNLFSHSHRCFHHIHKVDPFLFHIHTQFSVPFAQFNSSYSTKGPSRSYRRRARKRLLKSSKPTLDQTQFQHAQSQLPPRFTPEELCNVIRRQGDPLVCLELFHWASHQPRFRHDVSTFHVVINKLGAAKMYQEMDDIVSQLLAVPLIGSEPLFNSVIYYFTQARKLTRAVNVFKHMKSSRNLNCSFRPSVKTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGVKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNALTYDCLIHGLCAQGRTNNAKELCYEMKTKGFVPSSKSYNSLVNSLALGGEIEEAVHYLWEMTDKQKSPDFITYRTVLDEICRRGTIQEGMRFLQELQEKDLVDGYAYRKLLYVLDDDYGNSVSRNMGFHCHYDSQLRPCYHFLGRGGVSHPFCNAYMGRKGRKR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02556 465 NCBIfam pentatricopeptide repeat 267 301 IPR002885 -
Pste1g02556 465 NCBIfam pentatricopeptide repeat 303 335 IPR002885 -
Pste1g02556 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Pste1g02556 465 Pfam PPR repeat family 299 347 IPR002885 -
Pste1g02556 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Pste1g02556 465 Gene3D Tetratricopeptide repeat domain 328 403 IPR011990 GO:0005515
Pste1g02556 465 Gene3D Tetratricopeptide repeat domain 237 327 IPR011990 GO:0005515
Pste1g02556 465 Pfam Pentatricopeptide repeat domain 185 232 IPR002885 -
Pste1g02556 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Pste1g02556 465 PANTHER ATPASE EXPRESSION PROTEIN 3 70 413 - -
Pste1g02556 465 Gene3D Tetratricopeptide repeat domain 83 236 IPR011990 GO:0005515
Pste1g02556 465 Pfam PPR repeat 267 291 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02556 Pste-Chr1 9585978 9590011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02556 165 402 Glycosyltransferase AT1G05670 30.672 2.41e-28 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02556 1 9585978 9590011 Pste1g02556 1 9585978 9590011 ECH