Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02262 ATGTTGTCTGAATTGGGAAGAAGACCGATGCTTGGGAGTAACGATGGTTCTTTTGGTGATGAGTTGGAGAAGGAGATAGGGATGTTACTTCGTGAGCAACGCAGACAAGAGGCTGATGATCATGAGCGAGAGCTTAATATTTTTAGGAGTGGATCAGCGCCTCCAACTGTTGAGGGTTCTTTGAGTGCAGTTGGAGGGTTGTTTGGTACTGCTGGTGCTACTTCTGGTGCTACTGCTGCCTTTCCGGAGTTTCAAGGGACTAAAGATGTGAATGGGATTGCTTCTGAAGAAGAGCTTAGGTCTGATCCAGCTTATCTTTCATATTACTATTCCAATGTGAATATGAATCCGAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAACTTCAGTTCTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGGATTGATGATAATGATGGAAGATCGCCTTTCTCTACTCCTCCAGGCTTTAATACGAGGAAACACGAGAGTGATGTGGATAATGAAAAAACAAGAGGTTCGGCTGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGAATAGGGCTGAGTAAACAAAAGAGTTTTGCAGAAATTTTCCAGGTGGCTTGTTTCTTCTGCGATTCATTGGCTAATAATGGACTCAGTGCTGCATCAGATGATTTGGGGCATAATTCCTCTATTGCACGCCTTCCTTCTCGTCCATCTAGTCGTAATGCATTTGATGACAATGATATCATTAGTTCCACTGAAGCAGAGTTGGCTCATGTACGCCGTGAGTCCATGCCCTCTGATTTGTTAAGGTCAGGGTCAAATGTTCAAGGATCACCTGCAGCCCAAAATATTGGCCCACCAGCTTCATATTCTTATGCTGCTGCAGTAGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAACTTCTTGCTAGGGCTCCCAGTCCCTGCATTACGCCTATTGGTGGTGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCCAGTTCAGATGCATTTAATGGTGTTTCATCAGGCATCAATGGGTCAGCAGATCTTGTGGCTGCATTGTCAGTGATGAACTTGTCAGCAGATGATGTGTTAGATGGTGAAAACCATTTGCCATCACAGGTTGAATCAGAAGTTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGATCATAGAAAACAACATGCCTATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAGCAGGAGTGGATCAGATCTTGACAATCCATCCTCGGATAGGCCGGTTGAGCTACAAAAGTCTACTGTTCCTTCCAATAACTCATATTTTAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCACCTCAATTCCGGCCTTTAGATGGTACAAATTCATCATTTACTAACTTTGGTCTGAGTGGATATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCTCCCTTCTTTGAAAATATTGCTGCAGCATCGGCAATGGCAGCTACTGGAATGGATTCAAGAATTCTTGCAGGTGGTTTGGCTTCTGGAGCTGCTGCTCCATCTGATGTGCATAACCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAAGCTCCTTTTGTTGATCCCATGTATCTTCAGTACCTGAGAACATCTGAGTATGCAGCACAACTTGCTGCTCTTAATGACCCCTCTGTGGATAGGAACTACTTAGGTAATTCATACATGAATTTACTTGAGCTTCAGAAGGCTTATCTTGGGTCTATCCTCTCACCTCAGAAATCCCAATACAATGTATCGCTGGGTGGTAAATCAGGCAGCTCCACTCCTCATGGTTATTTTGAAAATCCTTCATATGGTGTTGGGTTGTCTTACCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACTTCTCCTGTTGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATGTGCGGTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTGATGGGACCTTGGCATGTAGATACTGGAAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAGGAGTTCAAAAGCAACAAAACTAAGTGTTTTGAGCTGTCTGAAATTGCGGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGTAGCCGATTTATTCAACAAAAGCTTGAAACAGCCACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCTCATGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTACATCCCAGAGAAGAGATTTAGCGAACAAACTTCTTGGTCATGTTCTAACACTTAGCCTTCAAATGTATGGCTGTCGGGTCATCCAGAAGGCCATTGAAGTTGTTGATCCTGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGCGTACGTGATCAGAATGGAAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTCTCAACATTTTTTGATCAAGTGGTGACACTCTCAACCCATCCATATGGTTGCCGAGTGATACAAAGAGTACTGGAGCACTGCAAAGATCCAACAACACAACAAAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAAGATCAGTATGGCAATTACGTTGTTCAGCATGTGCTGGAACACGGGAAGCCTAATGAGCGTTCTTCTATAATAAAGGAATTAGCTGGGAAGATAGTTCAAATGAGTCAGCAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTAACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGCACCACTGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGACCAACAACGCGAGCTGATTCTTTCTCGAATTAAGGTTCATTTGAATGCGTTGAAAAAGTACACCTATGGAAAGCACATTGTCGCACGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCTCCTCAACTTGCTTAGGTGGCTTAGAAATATAATCAATCTTGTACAGCTAACTGAGGCTAGTGTGAGCTGCTTGTTCATCCTCTTTCCCTTCCAAATCAAGAGGTTATGTTTGCCTATCTGTGAAGATGGGTTGTAGCCAATTGGAAATAAAGTTGTCGGTTGTACTGCAGAATTGTACATTTTGTAGCTTTAAGTTTATACAAAGAATTTAAGCGAGATGAGGCTCAGATGTTTTAATACACCTGGTGCCCCTGCAGAGGAGATAAAATGAAATGACTATACAAGCCTTTTTATGGTGTAAAGATTATAAAATGGTGAGGTAGTTTATAAGTTGACGTGACTGTACAAAATGATGGCATGTGAAGACCTGTTCTTGTTTAGACGAGGACAGTTTTATCTTTTCATCTTTTATCTTGTATACTTATTGACTTGGTTTTCTCTTTCAAGAGTATAATTTTTGTTAGAAATGTTAGTTTGCTTTTTTTTTTTCC 3677 0.421 MLSELGRRPMLGSNDGSFGDELEKEIGMLLREQRRQEADDHERELNIFRSGSAPPTVEGSLSAVGGLFGTAGATSGATAAFPEFQGTKDVNGIASEEELRSDPAYLSYYYSNVNMNPRLPPPLLSKEDWRFQQRLKGGTSVLGGIGDRRKVNRIDDNDGRSPFSTPPGFNTRKHESDVDNEKTRGSAEWGGDGLIGLPGIGLSKQKSFAEIFQVACFFCDSLANNGLSAASDDLGHNSSIARLPSRPSSRNAFDDNDIISSTEAELAHVRRESMPSDLLRSGSNVQGSPAAQNIGPPASYSYAAAVGSSLSRSTTPDPQLLARAPSPCITPIGGGRAIASDKRAIASSDAFNGVSSGINGSADLVAALSVMNLSADDVLDGENHLPSQVESEVDNHQRYLFGRQGGQDHRKQHAYLKKSESAHLQNSSKSRSGSDLDNPSSDRPVELQKSTVPSNNSYFKGSPTSHFSRGGSLPPQFRPLDGTNSSFTNFGLSGYAGNPALASLMTNQLGTGNLPPFFENIAAASAMAATGMDSRILAGGLASGAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEYAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVSLGGKSGSSTPHGYFENPSYGVGLSYPGSPMANSVVSTSPVGSGSPVRHNELNVRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLTSQRRDLANKLLGHVLTLSLQMYGCRVIQKAIEVVDPDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPNERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPPQLA 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 874 910 IPR001313 GO:0003723
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 983 1024 IPR001313 GO:0003723
Pste1g02262 1066 MobiDBLite consensus disorder prediction 1 20 - -
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 878 913 IPR001313 GO:0003723
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 806 839 IPR001313 GO:0003723
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 849 872 IPR001313 GO:0003723
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 952 985 IPR001313 GO:0003723
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 770 803 IPR001313 GO:0003723
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 997 1026 IPR001313 GO:0003723
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 917 948 IPR001313 GO:0003723
Pste1g02262 1066 Pfam Pumilio-family RNA binding repeat 734 768 IPR001313 GO:0003723
Pste1g02262 1066 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 710 1050 IPR033133 GO:0003723
Pste1g02262 1066 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 105 1049 - -
Pste1g02262 1066 MobiDBLite consensus disorder prediction 403 480 - -
Pste1g02262 1066 CDD Pumilio 726 1046 IPR033712 GO:0003723
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 730 765 IPR001313 GO:0003723
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 911 946 IPR001313 GO:0003723
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 766 801 IPR001313 GO:0003723
Pste1g02262 1066 MobiDBLite consensus disorder prediction 403 418 - -
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 838 873 IPR001313 GO:0003723
Pste1g02262 1066 Gene3D - 710 1056 IPR011989 -
Pste1g02262 1066 MobiDBLite consensus disorder prediction 172 186 - -
Pste1g02262 1066 Pfam Nucleic acid binding protein NABP 323 729 IPR012940 -
Pste1g02262 1066 MobiDBLite consensus disorder prediction 419 471 - -
Pste1g02262 1066 FunFam Pumilio homolog 1 isoform 2 709 1056 - -
Pste1g02262 1066 SUPERFAMILY ARM repeat 713 1047 IPR016024 -
Pste1g02262 1066 SMART pum_5 911 946 IPR001313 GO:0003723
Pste1g02262 1066 SMART pum_5 766 801 IPR001313 GO:0003723
Pste1g02262 1066 SMART pum_5 989 1024 IPR001313 GO:0003723
Pste1g02262 1066 SMART pum_5 730 765 IPR001313 GO:0003723
Pste1g02262 1066 SMART pum_5 838 873 IPR001313 GO:0003723
Pste1g02262 1066 SMART pum_5 947 982 IPR001313 GO:0003723
Pste1g02262 1066 SMART pum_5 874 910 IPR001313 GO:0003723
Pste1g02262 1066 SMART pum_5 802 837 IPR001313 GO:0003723
Pste1g02262 1066 MobiDBLite consensus disorder prediction 140 189 - -
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 947 982 IPR001313 GO:0003723
Pste1g02262 1066 ProSiteProfiles Pumilio RNA-binding repeat profile. 802 837 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02262 Pste-Chr1 7668625 7676387 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02262 1 7668625 7676387 Pste1g02262 1 7668625 7676387 ECH