Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02082 ATGGCTGCATCTTCCCTAACAACATCTTGTATCCTCCTCCCATTCACAATAAGCTCTAAATCCCCAAAACTATGTCTCTCTTTTCCATGCAAAAACCATACCCTCAGTGTCACAGCCTCAGCTGCTTCAACTTCAAATCCAACTCCAAGCCCCTCCATCGAAATCCACAAACCCAATCCCTCCAAGACTCTTCCTTTTCGAGTGGGTCATGGCTTTGACCTGCATCGCTTGGAACCCGGTTACCCCCTTATCATCGGTGGAATTAACATACCCCACGACAGAGGTTGCGAGGCTCACTCCGATGGGGACGTTCTCCTTCACTGCGTCGTCGATGCTATTTTAGGGGCTTTGGGTCTTCCTGATATTGGCCAAATTTTCCCGGACAATGATCCTAAGTGGAAGGGTTGTGCCTCTTCCAAACCTTTTTATGTTGTTTGGGATGTCCTCAACCTCTTTGCTGCATGCCCTGTGAGACTTATGCATGAGGCCGGTTATGAGATTGGAAATTTAGATGCCACATTAATACTTCAGAGGCCAAAACTAAGCCCACACAAGGATACTATCAAAGCCCACTTATCTGCACTGCTTGGAGTGGACTCTTCTGTAGTAAATATCAAAGCTAAAACTCATGAAAAGGTAGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTGGTTCTTCTAATGAAGAAATAAGAAGACAGTGTGGAAATGTTGAGTAACTTGGTACAACTTTAATTCGAAAAAACTATAACGTTTCTAAACTCTTTTTTTTTTTTTTTACTGTTTATGACTTATACATATTGTAGTTCACACTGGCAGCAAATTAATAGCAGATGCGGTAACAAATATATTTAGTATGGATGTGTGTAAACTATGTTATAGAGAGCTTGTTTTCAAAACAAGCATGAAATTTTTTTAAGTGGTTACGAATTTTTTGTTCACTTCAAAACAAATATATGGTCAAAGTTGGTGCTTAACA 988 0.4089 MAASSLTTSCILLPFTISSKSPKLCLSFPCKNHTLSVTASAASTSNPTPSPSIEIHKPNPSKTLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGCASSKPFYVVWDVLNLFAACPVRLMHEAGYEIGNLDATLILQRPKLSPHKDTIKAHLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02082 233 CDD MECDP_synthase 67 230 IPR003526 GO:0008685|GO:0016114
Pste1g02082 233 Gene3D - 63 233 IPR036571 GO:0008685|GO:0016114
Pste1g02082 233 SUPERFAMILY IpsF-like 65 232 IPR036571 GO:0008685|GO:0016114
Pste1g02082 233 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 100 115 IPR020555 GO:0008685
Pste1g02082 233 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 38 233 IPR003526 GO:0008685|GO:0016114
Pste1g02082 233 Pfam YgbB family 66 230 IPR003526 GO:0008685|GO:0016114
Pste1g02082 233 NCBIfam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 67 232 IPR003526 GO:0008685|GO:0016114
Pste1g02082 233 FunFam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 63 233 - -
Pste1g02082 233 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 66 232 IPR003526 GO:0008685|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02082 Pste-Chr1 6520255 6527987 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02082 1 6520255 6527987 Pste1g02082 1 6520255 6527987 ECH