LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02042	ATGTTGTACTATTTGCAAGAAAATTGGAGGAGACTTTGGGTTTTAGCATTATGGATTTCCGCAATGATTGCACTGTTTACGTGGAAGTTCATCGAGTACAAGCGAAAGGAAGCTTATCATATCATGGGTTACTGTCTACTCGCGGCCAAAGGTGCTGCTGAGACTCTCAAGTTCAACATGGCACTTATACTCTTGCCCGTGTGCAGAAATACCATAACATGGCTCAGGTCCACCAACTTGGCTTATATTGCACCTTTCGATGATAATATCAACTTACATAAGACAATTGCTGCGGCGGTATTGATTGGTGTTATACTTCATGCTGGAAATCACCTTGCTTGTGATTTTCCTAGGCTTGTAAATTCGTCTGAAGCTGATTATAATCAGTATTTGTATGGCGTATTTGGTGATCATAAACCCAGCTACGGAGACCTCGTTAAAGGAATTGAGGGTGTGACAGGAATTCTGATGGTGATTTTGATGGCAATAGCATTTACTCTTGCAACAAAATGGTTCAGGAGAAATCTCATTAAGCTTCCTAAACCGTTTAATAGGCTCACCGGTTTCAATGCGTTCTGGTATTCACACCATTTATTTGTTATTGTCTATGTCCTGCTCATCATTCATGGTGTAAATCTTTACCTCGAGCGCAGATGGCACCTTCAAACGACATGGATGTATCTTGCAGTTCCAGTTTTACTTTACGCAGGAGAAAGAACGATAAGATTCTTCCGTTCTGGTTTCTATACAGTTCGTCTGGTAAAGGTTGCCATATATCCCGGGAACGTTCTGACATTGCAAATGTCGAAGCCACCTCAATTTCGTTACAAGAGTGGACAATACATGTTTGTTCAATGTCCTGCTGTTTCTCCATTTGAGTGGCATCCGTTTTCTATTACCTCTGCCCCTGGAGATGACTACCTGAGTGTTCACATACGCCAACTGGGAGATTGGACACAAGAGCTCAAAAGGGTATTCTCTGCAGTCTGTGAGCCACCAGTAGCTGGGAAGAGTGGCCTTCTCAGGGCTGATGAAACCACCAAGAAATGTTTACCAAAGCTAAGGATAGATGGACCTTACGGTGCGCCAGCACAAGACTACAGAAACTATGATGTCCTGTTACTTGTCGGTCTTGGGATAGGAGCAACACCTTTTATCAGCATTCTGAAAGATCTTCTAAACAATATTATCAAAATGGAGGAGCTGGCGGATTCAGTCTCTGATTCAAGCAGAGGTTCAGACCTTAGTTCTGGGAGTGCAGACTCACTGTCTTTTAATAAGATTTCTCCTAAACGGAAGAGGACACTGAAGACTACCAACGCTTATTTCTACTGGGTAACAAGAGAACAAGGGTCTTTCGATTGGTTTAAAGGGGTCATGAATGAAGTTGCTGAACTTGATCAGAGGGGTGTCATTGAGATGCACAACTACTTGACTAGTGTATACGAGGAAGGTGATGCCAGATCCGCCCTCATTACGATGGTGCAAGCCCTCAACCATGCAAAAAATGGAGTTGATATTGTTTCCGGTACTAGGGTGAGAACACATTTTGCTAGGCCAAACTGGAAGAAGGTTTTCTCTAAAATATGTTCTAAGCACTGCAATGGACGAATAGGGGTATTCTATTGTGGCGCACCGGTTTTGGCCAAAGAACTAAGCAAGCTCTGCTTCGTGTTCAACGAAAAAGGTCAAACAAAATTCGAGTTCCATAAGGAGCATTTCTAAGGGAATTTGGATGGAGCTTCACATCTGTATCAAGAGTCAAAACAAGTAACGACTTGAACCCTTCATTTTAGCAACTTGTCGGAGCCAGATTATAAGATATTTTCAATTGGCTAAAACCTTAAGTATATAATATGAGGCATTGTATATCCCAGCCAGCAAAATTGGCCAAAGGAGATATTTTTCTTACAAGCCCCAGCAACAAAGTGGTACAGCTAAGTATGGATGGATACATTCATTGCCCTCATTTAATAGATTATTGGGCGAATAGAAAATATAGAACAGTTTTGAAACTGATAAAAGGAATCAGGTAGTGTTCCAGCTAAGGAGCAAGCATGACATAAGATGTGTG	2074	0.4185	MLYYLQENWRRLWVLALWISAMIALFTWKFIEYKRKEAYHIMGYCLLAAKGAAETLKFNMALILLPVCRNTITWLRSTNLAYIAPFDDNINLHKTIAAAVLIGVILHAGNHLACDFPRLVNSSEADYNQYLYGVFGDHKPSYGDLVKGIEGVTGILMVILMAIAFTLATKWFRRNLIKLPKPFNRLTGFNAFWYSHHLFVIVYVLLIIHGVNLYLERRWHLQTTWMYLAVPVLLYAGERTIRFFRSGFYTVRLVKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSAVCEPPVAGKSGLLRADETTKKCLPKLRIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIIKMEELADSVSDSSRGSDLSSGSADSLSFNKISPKRKRTLKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFSKICSKHCNGRIGVFYCGAPVLAKELSKLCFVFNEKGQTKFEFHKEHF	574

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02042	574	Pfam	Ferric reductase NAD binding domain	370	556	IPR013121	GO:0016491
	Pste1g02042	574	PANTHER	NADPH OXIDASE	6	574	-	-
	Pste1g02042	574	Pfam	Ferric reductase like transmembrane component	51	207	IPR013130	-
	Pste1g02042	574	PRINTS	Cytochrome B-245 heavy chain signature	152	175	IPR000778	GO:0016020\|GO:0016491
	Pste1g02042	574	PRINTS	Cytochrome B-245 heavy chain signature	375	392	IPR000778	GO:0016020\|GO:0016491
	Pste1g02042	574	PRINTS	Cytochrome B-245 heavy chain signature	352	365	IPR000778	GO:0016020\|GO:0016491
	Pste1g02042	574	SFLD	NADPH oxidase subgroup (NOX)	3	574	-	-
	Pste1g02042	574	ProSiteProfiles	Ferredoxin reductase-type FAD binding domain profile.	246	366	IPR017927	GO:0016491
	Pste1g02042	574	SUPERFAMILY	Riboflavin synthase domain-like	249	362	IPR017938	-
	Pste1g02042	574	Pfam	FAD-binding domain	249	363	IPR013112	GO:0016491
	Pste1g02042	574	SUPERFAMILY	Ferredoxin reductase-like, C-terminal NADP-linked domain	367	574	IPR039261	-
	Pste1g02042	574	FunFam	Respiratory burst oxidase homolog A	237	329	-	-
	Pste1g02042	574	FunFam	Respiratory burst oxidase protein A	361	574	-	-
	Pste1g02042	574	Gene3D	-	361	574	IPR039261	-
	Pste1g02042	574	Gene3D	Translation factors	238	328	-	-
	Pste1g02042	574	CDD	NOX_Duox_like_FAD_NADP	253	516	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02042	Pste-Chr1	6400199	6404261	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02042	2	574	Miscellaneous Gene Families	AT1G64060	81.152	0.0	1008

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g02042	1	6400199	6404261	Pste1g02042	1	6400199	6404261	ECH
	Pste1g02042	1	6400199	6404261	Pste3g00926	3	5800473	5812145	PCT