Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01931 TGGGGTTTGAAAATAAAGAAGTGGCAGAAGCAAGGAAGTGGTGCGAGCTGGGTTTGGTTTGGTTTGGTTTGGTTTGTTTGTGCTGTGAGTTGCGATCCTCTCTCAAGTCTGAATCAATCAATGGACATTGATTTCAAAGAATATCAACTGCGCTGCGAACTTCGCGGCCACGAAGACGACGTTCGCGGAATATGCGTGTGTGGCAACGAGGGCATAGCGACGTCGTCGAGGGACCGAACCGTCCGCTTCTGGTGTCTGGACAAGAACCGCAAGTTCGTCAGTTCCAAGATTCTGCTGGGGCACACGAGCTTTGTGGGACCCTTGGCATGGATTCCTCCGAATTCGGAGTTGCCGCAAGGTGGGGTTGTGTCTGGCGGCATGGACACTCTCGTCTTTGTCTGGGACTTGAACACTGGCGATAAGCTTCACTCTCTCAAGGGTCATCAGTTGCAGGTCACTGGCATTGCCGTTGATGATGGGGATGTTGTGTCCTCTTCTGTTGATTGTACCTTGAGACGGTGGAGGAATGGACAATCTGTAGAGGCGTGGGAGGCTCATAAGGCACCCGTTCAAGCAGTTCTAAAGCTGCCCACGGGAGAGCTTGTTACAGGTTCGAGTGACACTACTTTAAAGCTTTGGAGAGGAAAAACTTGTTTACATACCTTTGAAGGACATGCAGATACAGTGCGGGGCCTGTCTGTGATGTCTGGTCTTGGATTCCTATCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTGTTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCGCATGCAACGGGGCTTATCGTCAGTGGTAGTGAAGACCGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGCGTTTGGGATGCAAAATTTATGGAAAATGGGGATATTGTGACAGCATGTTCAGATGGAGTTGTACGCATTTGGACTGTAGACCAGGATAATGTTGCTGATCAGCTAGAGCTTGATTTATACACTTCACAACTTTCTCAATACAAATCTAGTAGAAAGAGGGTTGGAGGATTGAAATTGGAAGAGTTACCTGGCTTGGACGCACTGAAGATCCCAGGAACTACTGATGGCCAGACAAAAGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGGGTGGAACATGAAAGAACAGAAATGGGATAAAATTGGTGAAGTTGTTGATGGACCTGAGGAATCAAATCGCCAATTTTTTGATGGTGTTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTATTCGTAAGTTGCCATACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCTCTTTCTTTTCGTGAGCAAATTGTACAGTTTATTCTTCAAAATACTGGACAAAATAATAATACTTTTGATGCTTCATTTTGTGATCCCTACACTGGCTCCCATGCTTATGTACCAGGACAATCTTCACGTGTGTCTGATGTTTCTGCAAAACTTTCTTTCAAGCATATTCCTAAGAAAGGGATGCTGGTTTTTGATGCAGCACAGTTTGATGGGATCCTTAAAAAAATTACTGAGTTCAATAATGCTTTACAATCTGATCAGGAAAATCAGACCTTGTCTCTGACTGAGCTGAATGTTTCCAGATTGGGTGCCGTTGTTAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTTCAGACTCTGATGTGGCCCTGTTACTGAGTCTACTTCAATCATGGCCAATCACAATGATATTTCCTGTCATTGATATTGTAAGGATGCTAGTTCTTCATCCAGACGGGGCTATTTTACTTCATAAGCATTTTGAGGCAAAAAATGACATACTAATGGAAGTGATTAAGAAAGTCACTGTAAATCCAACAATTCCTGCAAATCTGTTGACCAGCATTCGTGCGGTAACTAATCTCTTCAGGAATTCATGCTACTACAACTGGTTGCAGAAACATCGTAGTGAGATTCTTGATTCTTTCTCAAGTTGTAGTTCATCTCCAAACAAAAATTTGCAGCTGTCATATTCTACCCTGTTGCTAAATTATGCTGTGCTATTGATTGAATCAAAAGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGATTGCTGAGGATGAAAATGTAGAAGTTGATCCCAAATTTCGTGCTTTAGTTGCTGTTGGATCATTGTCTGTGGAACACCTTTGTTGTGCTTCAGAACGAGCCGTCGAGCTCGAAGATTCATTGACAGATATATTCAGAGTGGAAAAACAAAAGCATCGTCAGAATTACAGATTTCCACTGCTCCTCCCTACTTTGTGACCATTGTAGTCAGAAACCCGTGGGGATGTTATTTGATAGATTTCTTAATATTCCTAATAAATAAAATAATAAAAATATATTGACTTATATAAAATATATTGG 2490 0.4213 WGLKIKKWQKQGSGASWVWFGLVWFVCAVSCDPLSSLNQSMDIDFKEYQLRCELRGHEDDVRGICVCGNEGIATSSRDRTVRFWCLDKNRKFVSSKILLGHTSFVGPLAWIPPNSELPQGGVVSGGMDTLVFVWDLNTGDKLHSLKGHQLQVTGIAVDDGDVVSSSVDCTLRRWRNGQSVEAWEAHKAPVQAVLKLPTGELVTGSSDTTLKLWRGKTCLHTFEGHADTVRGLSVMSGLGFLSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHATGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVDQDNVADQLELDLYTSQLSQYKSSRKRVGGLKLEELPGLDALKIPGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDGPEESNRQFFDGVQYDYVFDVDIGDGMPIRKLPYNRSDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQNNNTFDASFCDPYTGSHAYVPGQSSRVSDVSAKLSFKHIPKKGMLVFDAAQFDGILKKITEFNNALQSDQENQTLSLTELNVSRLGAVVKILKDTSHYHSSKFSDSDVALLLSLLQSWPITMIFPVIDIVRMLVLHPDGAILLHKHFEAKNDILMEVIKKVTVNPTIPANLLTSIRAVTNLFRNSCYYNWLQKHRSEILDSFSSCSSSPNKNLQLSYSTLLLNYAVLLIESKDQEGQSQVLSAALEIAEDENVEVDPKFRALVAVGSLSVEHLCCASERAVELEDSLTDIFRVEKQKHRQNYRFPLLLPTL 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01931 795 ProSiteProfiles PUL domain profile. 521 795 IPR013535 -
Pste1g01931 795 ProSiteProfiles PFU domain profile. 397 492 IPR015155 -
Pste1g01931 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 94 IPR001680 GO:0005515
Pste1g01931 795 Gene3D - 43 348 IPR015943 GO:0005515
Pste1g01931 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 213 IPR001680 GO:0005515
Pste1g01931 795 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 46 750 - -
Pste1g01931 795 SMART WD40_4 47 85 IPR001680 GO:0005515
Pste1g01931 795 SMART WD40_4 294 331 IPR001680 GO:0005515
Pste1g01931 795 SMART WD40_4 215 253 IPR001680 GO:0005515
Pste1g01931 795 SMART WD40_4 176 214 IPR001680 GO:0005515
Pste1g01931 795 SMART WD40_4 91 135 IPR001680 GO:0005515
Pste1g01931 795 SMART WD40_4 138 175 IPR001680 GO:0005515
Pste1g01931 795 SMART WD40_4 255 293 IPR001680 GO:0005515
Pste1g01931 795 FunFam Transducin family protein / WD-40 repeat family protein 416 490 - -
Pste1g01931 795 FunFam Phospholipase A-2-activating protein isoform A 521 781 - -
Pste1g01931 795 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Pste1g01931 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 252 IPR001680 GO:0005515
Pste1g01931 795 Gene3D - 521 785 IPR011989 -
Pste1g01931 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 144 IPR001680 GO:0005515
Pste1g01931 795 Pfam PFU (PLAA family ubiquitin binding) 377 485 IPR015155 -
Pste1g01931 795 CDD WD40 50 330 - -
Pste1g01931 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 293 IPR001680 GO:0005515
Pste1g01931 795 Gene3D - 415 488 IPR038122 -
Pste1g01931 795 SUPERFAMILY WD40 repeat-like 45 346 IPR036322 GO:0005515
Pste1g01931 795 FunFam Polyubiquitin binding protein (Doa1/Ufd3) 44 350 - -
Pste1g01931 795 Pfam WD domain, G-beta repeat 217 252 IPR001680 GO:0005515
Pste1g01931 795 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Pste1g01931 795 Pfam WD domain, G-beta repeat 182 213 IPR001680 GO:0005515
Pste1g01931 795 Pfam WD domain, G-beta repeat 52 84 IPR001680 GO:0005515
Pste1g01931 795 Pfam WD domain, G-beta repeat 139 174 IPR001680 GO:0005515
Pste1g01931 795 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Pste1g01931 795 Pfam PUL domain 523 755 IPR013535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01931 Pste-Chr1 5999904 6015783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01931 41 758 Acyl Lipid Metabolism Gene Families AT3G18860 70.735 0.0 1101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01931 1 5999904 6015783 Pste1g01931 1 5999904 6015783 ECH