Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01683 AATTTAATTCCGATCTCTCTCTCTCTCTGGTTGTTGTTTTTCTGTGAATTAACATACTCCATAACCATAGCCAAATCTCATCTGAAAACAGAAGTGAATATTCTGGCTCTCTGTCTTCTCTCTCTATACATGCTTATCATCAGCACACTCCTGTCGGTGAACTTTATTTCTTTATAGTAATCAGATCTGAGAGTGAAGGGACTCAGTTTCCACAGCAAGAGACCCTGGATCCTCGCCAGTCTTCACAGTGGCGTGATCCAACTATGGGATTACCGAATGGGACCCTTATTGACAGATTCGACGAGCATGATGGTCCCGTCAGAGGTGTTCATTTCCATAATTCTCAGCCCCTCTTTGTCTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTCTAGGACACCTTGATTATATCCGTACGGTGCAATTTCATCATGAGAACCCATGGATTGTTAGTGCCAGTGATGATCAGACCATTCGCATCTGGAACTGGCAATCACGTACTTGTATATCTGTTTTAACTGGGCACAATCATTATGTTATGTGTGCTTCATTCCATCCAAAAGAGGATATTGTTGTGTCAGCTTCCCTGGATCAGACTGTTCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCTGGGCCTCCTGCAGAGGACATTCTACGATTGAGTCAGATGAACACCGATCTTTTTGGAGGTGTTGATGCAGTAGTTAAGTATGTATTGGAAGGTCATGACCGGGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTCATTGTCTCCGGAGCTGATGACCGACAAGTGAAGCTTTGGAGGATGAATGACACTAAGGCATGGGAAGTGGATACTTTGAGAGGGCATATGAATAATGTTTCATGTGTTATGTTCCATGCTAAACAGGACATCATTGTGTCCAATTCTGAGGATAAAAGTATTCGAGTATGGGATGCCACAAAGCGGACAGGAATTCAAACTTTCCGCAGAGAGCATGATAGGTTTTGGATTCTTGCTACACATCCTGAAATGAATTTGCTGGCAGCTGGTCATGACAGTGGCATGATAGTCTTTAAGCTGGAGAGAGAAAGGCCTGCTTTTGCAGTTAGTGGTGATTCTTTATTCTACACAAAAGATCGATTCTTGCGTTTCTTTGAATTTTCAACTCAGAGAGAGACACAAATACTTACAATTCGACGACCTGGTTCTTCATGTTTGAATCAAAGTCCAAAGACTCTTTCCTATAGCCCTACTGAAAATGCAATTCTTTTGTGTTCAGACATGGATGGGGGATCTTATGAGTTGTATTGCATATCCAAAGATGGCACCAAGGACAGTTTTGGTAGGGGTGATATGCAAGATCCAAAGAAAGGTCTTGGAGGCTCTGCAGTCTTTGTGGCTCGAAATAGGTTTGCTGTGCTTGACAAAGGCAGCAACCAAGTATCTGTGAAAAATCTGAAGAATGAGTTGGTTAAAAAGAGTGCCCTCCCAATTGCTGCAGATGCTATATTCTATGCTGGAACAGGAAATTTGCTATGTAGATCAGAGGATAGGGTTTTTATATTTGATCTACAGCAGAGGATTATTCTCGGTGATCTTCAGACCCCTTTTATAAAGTATGTAGTCTGGTCTAATGACATGGAAAGTGTTGCTCTGCTCAGTAAACATGCTATTGTCATTGCTAGCAAGAAGCTTGTGCATCAATGCACCCTCCATGAGACAATCCGAGTAAAAAGTGGAGCGTGGGATGACAATGGCATTTTTATTTACACGACTTTAAATCATATCAAATATTGCCTCCCTAATGGAGATAGTGGGATCATAAAAACACTTGATGTCCCAATTTATATCACAAAGGTTGTTGGAAACACCATCTTCTGCTTAGGTCGGGATGGGAAAAACAAGGCCATAACTGTTGATGCAACAGAATATATCTTCAAGCTTTCCTTGTTGAAGAAAAAATATGACAATGTAATGAACATGATAAGAAATTCACAGCTTTGTGGGCAGGCTATGATTGCTTATCTACAACAGAAAGGGTTTCCTGAAGTCGCCCTCCATTTTGTGAAAGATGAGAGAATCCGATTCAATTTGGCTTTGGAGAGCGGCAACATTCAAATTGCAGTTGCATCAGCAACAGCAATTGATGAAAAAGATCACTGGTATCGATTAGGGGTTGAAGCTCTTCGTCAAGGTAACTCTGGTATAGTAGAGTATGCATACCAAAGGACAAAAAATTTTGAGAGACTTTCATTCCTTTATCTCATTACTGGTAATGTGGAGAAACTTTCAAAAATGTTGAAAATTGCTGAAGTGAAGAATGATGTGATGGGCCAGTTTCACAATGCCCTATATATGGGTGATATCAGAGAGCGTGTTAAGATTTTGGAGAATGTGGGACATTTGCCTCTTGCATACATCACTGCTACAGTCCATGGGCTACATGATGTTGCTGAAAGGCTTGCAGCTGAGCTGGGGGATAATGTCCCATCTGTGCCTGAGGGAAAAGTACAATCTCTATTGATTCCACCATCACCTATATTATCTGGTGGAGATTGGCCCCTCCTTAGGGTCATGCGGGGAATATTTGAAGGTGGTTTTAACAATACAGATAGAGATGCTGATGAAGAAGAATATGAGGCTGCTGATGGTGATTGGGGAGAGGAGCTTGATATGGTTGATGTAGATGGGTTACAAAATGGAGATGTTGCTGCAATTTTAGATGAGGTAGAAGTGGCGGAAGAGGATGACGAAGAAGGGGGATGGGAGCTGGAAGATTTAGAGCTGCCCCCAGAAGCTGACACACCAAAAGTTTCTGTCAGTTCACGATCTTCAGTTTTTGTGGCCCCAACACCTGGGATGGCCGTTAGCCAGATATGGATTCAGAGATCATCTCTTGCAGCTGATCATGTAGCTGCTGGCAATTTTGATACTGCAATGAGATTACTAAACAGACAACTTGGGATAAGAAATTTTGCCCCTTGAAATCTATGTTCGTAGATCTACATACTGGCAGTCATTCCTATCTGCGTGCCTTTTCATCCTCCCCAATTGTATCAATTGCTGTTGAAAGAGGTTGGACTGAGTCATCTAGTCCAAATGTGAGAGCTCCACCAGCACTTCCTTTCAAATTGTCTCAATTAGATGAAAAACTCAAAGCTGGTTATAAGTTGACAACTGCTGGGAAATTTACTGATGCTCTTCGCACTTTTGTCAATATTCTTCATACAATTCCTTTGATTGTTGTTGAGTCAAGGAGGGAGGTCGATGATGTGAAAGAATTGATCATCATAGTGAAAGAGTATGTTTTGGGGCTGCAGATGGAGCTGAAAAGAAGGGAAATTAAGGACAATCCAGCACGCCAGCAAGAGCTTGCAGCTTATTTCACCCACTGCAATCTTCAAACACCTCACTTGAGGCTAGCTTTGCTGAATGCCATGACTGTCTGCTACAAGGCAAAGAGCCTTTCCACGGCTGCTAACTTTGCCCGGAGGCTACTTGAGACCAATCCTACTATTGAAAACCAAGCTAAGACGGCAAGGCAAGTACTGGCAGCTGCAGAAAAGAATATGACTGATGCCATACAATTGAACTATGATTTCAGAAACCCATTTGTAATTTGTGGGGCAACCTATGTGCCCATTTATCGTGGACAGAAGGATGTTTCTTGCCCCTATTGTACTTCTCGTTTTGTGCCTAGCCAGGAGGGGCAACTATGTGCTGTATGTGAGCTTTCAGTGGTAGGGGCAGATGCTTCAGGATTGCTTTGCTCTCCTTCCCAGATTCGTTGATTGCACTGGATCAAGTGTGGTTAATGAATTTTTGTTTCAGGTCAATTTTCAACAGCAGATGGGAGTCATATTCATCAATTAATATATTTTCTGTAGAAGCTAGAAGTAGTCAAGAGTTACTGTTTCTGAGTGAATTTCTGTCTTTCCTTCTTTTTTTTTATCATGCTTTTATAATTCTTTTCCCCTCTGCTAAGTCTAAGAGGAAGGGGAAAAGGCCTATTAATATTTCGTGCATGTGAAGTTTTCTTGTATTATGTTGAATTAATTTTATTAGTTTGAGTTGGAAATCGTAACATTTTGAGGCTTAAATAAAGTAATTCTACCGTGATTCTTGA 4158 0.4158 MGLPNGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPAEDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILATHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFFEFSTQRETQILTIRRPGSSCLNQSPKTLSYSPTENAILLCSDMDGGSYELYCISKDGTKDSFGRGDMQDPKKGLGGSAVFVARNRFAVLDKGSNQVSVKNLKNELVKKSALPIAADAIFYAGTGNLLCRSEDRVFIFDLQQRIILGDLQTPFIKYVVWSNDMESVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTIFCLGRDGKNKAITVDATEYIFKLSLLKKKYDNVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLPLAYITATVHGLHDVAERLAAELGDNVPSVPEGKVQSLLIPPSPILSGGDWPLLRVMRGIFEGGFNNTDRDADEEEYEAADGDWGEELDMVDVDGLQNGDVAAILDEVEVAEEDDEEGGWELEDLELPPEADTPKVSVSSRSSVFVAPTPGMAVSQIWIQRSSLAADHVAAGNFDTAMRLLNRQLGIRNFAP 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01683 917 SMART WD40_4 47 86 IPR001680 GO:0005515
Pste1g01683 917 SMART WD40_4 158 197 IPR001680 GO:0005515
Pste1g01683 917 SMART WD40_4 89 128 IPR001680 GO:0005515
Pste1g01683 917 SMART WD40_4 5 44 IPR001680 GO:0005515
Pste1g01683 917 SMART WD40_4 244 282 IPR001680 GO:0005515
Pste1g01683 917 SMART WD40_4 202 241 IPR001680 GO:0005515
Pste1g01683 917 Gene3D - 2 284 IPR015943 GO:0005515
Pste1g01683 917 SUPERFAMILY Tricorn protease domain 2 288 554 - -
Pste1g01683 917 FunFam Coatomer subunit alpha 3 284 - -
Pste1g01683 917 CDD Coatomer_WDAD_alpha 288 744 IPR047312 -
Pste1g01683 917 PRINTS G protein beta WD-40 repeat signature 228 242 IPR020472 -
Pste1g01683 917 PRINTS G protein beta WD-40 repeat signature 73 87 IPR020472 -
Pste1g01683 917 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Pste1g01683 917 PANTHER COATOMER 6 296 - -
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 165 199 - -
Pste1g01683 917 Pfam Coatomer WD associated region 313 736 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Pste1g01683 917 ProSitePatterns Trp-Asp (WD) repeats signature. 115 129 IPR019775 -
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 44 - -
Pste1g01683 917 FunFam Coatomer subunit alpha 608 780 - -
Pste1g01683 917 SUPERFAMILY WD40 repeat-like 3 280 IPR036322 GO:0005515
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515
Pste1g01683 917 Pfam Coatomer (COPI) alpha subunit C-terminus 783 917 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Pste1g01683 917 Pfam WD domain, G-beta repeat 10 44 IPR001680 GO:0005515
Pste1g01683 917 Pfam WD domain, G-beta repeat 163 196 IPR001680 GO:0005515
Pste1g01683 917 Pfam WD domain, G-beta repeat 91 128 IPR001680 GO:0005515
Pste1g01683 917 Pfam WD domain, G-beta repeat 49 86 IPR001680 GO:0005515
Pste1g01683 917 Pfam WD domain, G-beta repeat 206 241 IPR001680 GO:0005515
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 241 - -
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 250 IPR001680 GO:0005515
Pste1g01683 917 CDD WD40 3 282 - -
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 129 - -
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 53 IPR001680 GO:0005515
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 129 IPR001680 GO:0005515
Pste1g01683 917 Gene3D - 608 780 - -
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 86 - -
Pste1g01683 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01683 Pste-Chr1 5194991 5200491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01683 27 284 Miscellaneous Gene Families AT5G08390 25.194 5.29e-23 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01683 1 5194991 5200491 Pste1g01683 1 5194991 5200491 ECH