Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01012 GTTTTTCACCTTCCCTCTTCTTCCTCCTACCAAAACCCTAACTTCCAAACCCACTCCCCCAATTTGATTTCTTTATTTTAAAATCCAAAAACTTTCCCAAATTCGCTGCTTTAGAACCCCCCACCATTCTCTTTATCTAGTTCAATTCCACTATCTGGCCAAAATTTGCGCCTAATTTTTCAACCCTAATATAGGTCATCCTCGCGAAATTCCATGTGTTTCTCAGTCTCTCAGCCCGCTATAACCGCTGCAGAGTCAATGGGTGATCCTCCTCCGCCGAGTATCTATTCCGAAGCCCCAAGTGATACCGATTCAGACGCTGATTCTGGCCATGCCATCGTTAAGTCCCCGACCCCGGCGGATTCCGGTATTCCCGTCGGCGAGTACGGCGATGACCCGCCACGAGAGGGTTCCGGCGTGTCTTCCTCGTTCCGGCAGCTCAACGATAACTCGTCCTCGCTGTGGTCGTCGGCGTTGGCTTCCAATTCGCACATCTCCGCTGACCAGCCCAAATCGTGGATTGCTTCCGAAGGAAACTGGCTCTTAGCTGAAGATCTCGATTCAAGGGACGCAGAATGTGTCACTGAAGATGTTCCTTCCAAGATGGTGGGAGCAGGGCTTTGGAATCTTGGCAATACGTGCTATCTTAATGCTATTCTGCAATGCTTTACGCACACGGTGCCTCTAGTGCAGGGTCTTCGTGCCTGCACTCATACCTTTCCTTGTGCCAGTTATGAGGATGGGTTCTGTGTTATATGTGCTTTTCGTTGCCAAGTTGACAGATCCATAGCGTCCTCAGGACAGGCTCTTAAACCCCTGATATTTGTGCACAATTTGAACTATTTTTCTTCTGTGTTTACAAGATATCAGCAGGAGGATGCTCATGAATTTATGCAGTGTGCTTTAGATAAACTGGAAGGATGTTACCTAGATTTGAGGAAGAGTAATTTAAATTTTGAAGATGATAATCTTGTAGAGAAAGTATTTGGGGGTCGCCTCATTAGCAAACTTCGATGTTGTAGTTGTGATCACACTTCTGACACTTTTGAGCCACTAATCGATATGAGTTTAGAGATAGAAAATGTAGATTCTCTTCCAAGTGCCCTGGAATCTTTTACTAAGGTGGAAAAGATTGATGCAAGCTTTAAATGTGATAGCTGCAAGGAAGAAGTGTCCACAGAGAAGCAGCTCATGCTGGATCAGACACCATTAGTTGCAGCATTTCATTTAAAGAGATTTAAGACAGATGGGACCCATGTTGAAAAGATTGATAAGCATATTGATTTCCCGTTGGAGTTAGATTTGCAACCTTACACCATTTCTAATCAAAATGATGTACCATTGAAATATGATTTATATGCCATTGTTGTACACACTGGATTCTCATCTACTTCAGGGCATTACTTCTGCTTTGTTCGCTCTGCTCCAGACACATGGCATAAGTTGGATGACTCAATGGTTACTAAGGTCTCAGCAGACTCCGTACTGTCTCAGGAAGCATACATATTGTTTTATGCACAACATGGTACACAGTGGTTTTCAAGTATTATGGAATCTCAAACAGAATGCTTGGATCCAAATGTTATGCATACATCTCCCAAGTCTGTTTTGGATGTTGGTGACAGCATGTCTAAACCAAATCCTATTATAATTTCAAATACTGGAAGAGGCTGTGCTAGTGAATCCAAAGATTCCGAGCCTCAGTTGGATCAGTATCGTGAAGAAAATGGATTTCTTGAAGTCAATGACACTAATGATGCTGCTCATGGCAGTGAACAATTGCCCTCTCGGTCAAATCAAGAAAGCATTGAGTTGAAAAGCTCCAGAGTTGATGCCCAAAAGCTGTTTAGGAAGAAGACCACTTTGGATGACCGTGCCATGTGTGATAGAAATTCATATATTAATGGTACTCGTGATAATAAGGAAGTTGTTTATGATAATGAGGAAGTTGTTCATGATAGCGAGGAAGTTGTTGATTTTGGAGAGAATGCTTGTTTCCACGCTTTAACTCCGCCTAATTCTCCTCCCAATGATGCTTCAGATAAGTTTTATACCTCACATGATAATTTGAAGAAGACGAAGCATGGGAGCTGTAAAAAATCATCAAACAAGTCTGCCGAGGATTCTCAAAGAAGAGCAGCTATGAATGATCTTAACAAGATGATTGGTTCAAGGAGAGGAGCATTATTGAAATTTGTTACTCAGCAGGATCAAGTATTGGACAAGAAGAGGAAACAGATGGATTCGTCGCAATGTAAGAAAAACAATCTTGGTGAGCGCAAAAAATCAAACCATACATCTGTCAGTCGTCCTGTGGCAGCTGCATTTTCACAGTGAATAGTCTTTTTGGTGTTTTGGCCATGTAGATTTCTTTTGTGAAAAACCTAAACCTGCGATCTTTTTACTAAAACTTGTCAATACTTACCGCTGAATTGTACAGTTTCAGTTTCAGTTTCACCCCCCCGAACGAGAGATGCTTGAATGTACTGGTTATATGAATATGTTCCCCTTCTGCACATGTAGGAACATAGCCAGTGAGGACAAAGGATGTATAAATGATTACATCTACATCGATAAATAAAATGATCATATCAGAAATATATAATATTTGATTTCTTG 2619 0.4173 MCFSVSQPAITAAESMGDPPPPSIYSEAPSDTDSDADSGHAIVKSPTPADSGIPVGEYGDDPPREGSGVSSSFRQLNDNSSSLWSSALASNSHISADQPKSWIASEGNWLLAEDLDSRDAECVTEDVPSKMVGAGLWNLGNTCYLNAILQCFTHTVPLVQGLRACTHTFPCASYEDGFCVICAFRCQVDRSIASSGQALKPLIFVHNLNYFSSVFTRYQQEDAHEFMQCALDKLEGCYLDLRKSNLNFEDDNLVEKVFGGRLISKLRCCSCDHTSDTFEPLIDMSLEIENVDSLPSALESFTKVEKIDASFKCDSCKEEVSTEKQLMLDQTPLVAAFHLKRFKTDGTHVEKIDKHIDFPLELDLQPYTISNQNDVPLKYDLYAIVVHTGFSSTSGHYFCFVRSAPDTWHKLDDSMVTKVSADSVLSQEAYILFYAQHGTQWFSSIMESQTECLDPNVMHTSPKSVLDVGDSMSKPNPIIISNTGRGCASESKDSEPQLDQYREENGFLEVNDTNDAAHGSEQLPSRSNQESIELKSSRVDAQKLFRKKTTLDDRAMCDRNSYINGTRDNKEVVYDNEEVVHDSEEVVDFGENACFHALTPPNSPPNDASDKFYTSHDNLKKTKHGSCKKSSNKSAEDSQRRAAMNDLNKMIGSRRGALLKFVTQQDQVLDKKRKQMDSSQCKKNNLGERKKSNHTSVSRPVAAAFSQ 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01012 707 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 135 150 IPR018200 GO:0004843|GO:0006511
Pste1g01012 707 Gene3D Cysteine proteinases 131 445 - -
Pste1g01012 707 MobiDBLite consensus disorder prediction 1 74 - -
Pste1g01012 707 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 379 397 IPR018200 GO:0004843|GO:0006511
Pste1g01012 707 FunFam Ubiquitin carboxyl-terminal hydrolase 20 130 440 - -
Pste1g01012 707 MobiDBLite consensus disorder prediction 666 695 - -
Pste1g01012 707 MobiDBLite consensus disorder prediction 666 707 - -
Pste1g01012 707 MobiDBLite consensus disorder prediction 598 641 - -
Pste1g01012 707 MobiDBLite consensus disorder prediction 514 535 - -
Pste1g01012 707 Pfam Ubiquitin carboxyl-terminal hydrolase 135 434 IPR001394 GO:0004843|GO:0016579
Pste1g01012 707 MobiDBLite consensus disorder prediction 515 535 - -
Pste1g01012 707 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 75 436 - -
Pste1g01012 707 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 134 437 IPR028889 -
Pste1g01012 707 SUPERFAMILY Cysteine proteinases 134 435 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01012 Pste-Chr1 3228479 3232214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01012 130 451 Miscellaneous Gene Families AT4G31670 33.233 1.35e-51 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01012 1 3228479 3232214 Pste1g01012 1 3228479 3232214 ECH