Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00893 ACGGCGAAGAAGTTGAGAAAAACATGTATTTGTTTGTTTTAAGAAAACCCTGTTGTTCATCTCCAGGTCCATCCCTAAGTAAGCCGTTTTGGGTTTTGTATCTTGTCCTTCCTTACTCTGTGCTTTTGTTCCAACTGTGTATTGATGGGTGTGTCTTCATGTCGTTAATATGCTTTGTTGGGAGTGGTTTACTCCGCCGCCAAGTCCACTTCCCACGCCAATGCCTGTTCAGGCCTTCACGCCGTGCCCGTGCCCGTGCCCGTGCTCGTGCTCGTGTTCGTAGAAGGAGGGACTTGTCTCCTTTACCGGCCAGGGTGTTTAAGTCACTGAACTGGAAGGTAGCAAGAAAAATAAGATCCGGTGTTGTGTTTGATGTGCTCATAAAAGTGTTTGCATCCAACTCTATGCTGGAAGATGCTCTTGACGTGTTTGTGACTGCCAAGCATGCTGGGCTTGAGCCTGATATAAAGGCTTGCAATTTCTTGTTGAAATGTTTGGTTGAAGCAAATAGAGTGGAGTTTGTTATATGGTTTTTTGAGGAATTGGAGAAAGGTGGTCCGTCGCCAAATATCTACACCTATACAATCATGATGAACTTTTATTGTAGTGATGTTGTGTGTGATGCTGGTGTGAGACAGGCTGCTGCGGTTTTAGGAAAAATATATAATAGTGGGAAAAAGCCAACTGTTGTCACGTATAGTACTTATATTCGTGGACTTTGTAAAGTTGGTAAGGTTGAGACTGCTCTGATGCTAATTCGCAACTTGTACTATAAAAATCAGCCTCTCAATTGCCATTCTTTTAATGCTGTGATTTATGGGTTTTGTAAAAGAGGTGAAGTGTGTGAAGCTTTGCAAGTTTTGGAAGAAATGAAGATCTCTGGGATATTGCCCGATGTTTATAGCTACAGCATATTAATTAATGCATTCTGCAATGAAGGGGATCTATTGAAATGTCTTGACTTGATGGAGGAAATGGAACTCTCCCAGATAAAACCATCCATTGTTAGCTACACCTCCATCATACATGGTCTGTGCAAGAAGAATCTGATACAAAATGCAGTGAATATGTTCCATAGTATTGGTTCTTCTAGTTGCAAATATGATCGGACTGTGTATGAAACATTAATTGATGGGTTTTGCTTGCAAGGTGACGTGGATTCAGCCATCAAGCTTTTGGAGGAGATGATCAGCAATGATTTGGTTCCTACCGCTTTTAGTTGCCGCAGTCTAATTAGGGGATACTACAAACTAGGACTGTTCGATCAGGCATTGAAAGTTTTTAATACCATGCTACAAGTTGGCGCTTTGCCAGATACTATAGCTTGCAATTATATTCTTGATGGATCTTGCAGGGCAGGGTACTTTGAAGAAGCCTTGACGCTATTGGAGGGTTTCCAAGAAAATGGATTTAAGCTCAACTCGCATTCGTATAATACAATAATCTACAAACTCTGTAAAGATAGTTATCCTGAAAGAGCATTGGAGCTCCTGCCAAGAATGCTTAAAAGGAATGTACTTCCGGCAGTTGTTAATTATAGTACTCTTATATCTGCCTTTGCCAAGCAATCAAATTTAAAAAGGGCAATGAGGTTATTCACAAGAATGGTAAAAGTGGGGATAACTTTCAATGCTGCCACATATACAATTCTTATGAGCATGTTTAGCCACAGTCACAAAATGCATGAAGCATATGGCATTTTTAAGGAAATGAAAGCAAGGGCTTTGCATCCAGATCAGATTTCATATACAACTTTAATAGCTGGCTTTTGTAAAAATGGAGAAATAAAAAAGGCCTGGGCTTTATTTGAAGAAATGTCAAGGGAAGGAGTTTTGCCAAATGTTACTACATACACTTGTATGATTGATGGATTTTGCAAGTCAAACCGAATAGATTTGGCTACCTGGTTGTTTGATAAAATGAGCAGAGATTCAGTTATTCCCGATGTTGTAACTTACACTGTCCTCATTGCCTGGTACCATAATCATGGGTACATAGATCAGGCGCATAAGCTATATGATGAAATGAAGGAAAATGATATTTTGCCAGATGATATAACTCATAGTGTTCTAGGCCTGAAAGCTGGTGCAGTTCCAAAAGGTCAGGAAGATGAATTCACTTGTAGGAAAATGCTGAATCATCACGCAGAAGCTGTGCTAGATGTCCATAAGTTATTCTTGAAGATACATTCGTCATTTAAAGATGGGTATTCAGATGATACTGGAGGTAAAACAGCAGGAAAGAGGATGATAAACACTAGACAAAAAGCTGCAGATTTCCATTCTCTACTTAAAGATGTACTGATGGATTTCGGGGAAAGAACTAAGGCAGATGTGGTTGATTGGGGGATGGATATATTTGCTGAATCCGATGCCAGTTCTCCAGAATTACTATTTACTGGAGTATAATATTTTCCCTTTTCCTCGGCATAAGTATTTTTGTTGAATGAAATATATTTAGTGTGTATTTCAGTCCCTGTATATTTTTTCCCATAGGTACTGGAAAAGTTTTATCGACTTTAATTTGTTTTGTAACATCTAAAGAAGTCAACAGTTGGGTTATTTTAAAATGAC 2573 0.3921 MYLFVLRKPCCSSPGPSLSKPFWVLYLVLPYSVLLFQLCIDGCVFMSLICFVGSGLLRRQVHFPRQCLFRPSRRARARARARARVRRRRDLSPLPARVFKSLNWKVARKIRSGVVFDVLIKVFASNSMLEDALDVFVTAKHAGLEPDIKACNFLLKCLVEANRVEFVIWFFEELEKGGPSPNIYTYTIMMNFYCSDVVCDAGVRQAAAVLGKIYNSGKKPTVVTYSTYIRGLCKVGKVETALMLIRNLYYKNQPLNCHSFNAVIYGFCKRGEVCEALQVLEEMKISGILPDVYSYSILINAFCNEGDLLKCLDLMEEMELSQIKPSIVSYTSIIHGLCKKNLIQNAVNMFHSIGSSSCKYDRTVYETLIDGFCLQGDVDSAIKLLEEMISNDLVPTAFSCRSLIRGYYKLGLFDQALKVFNTMLQVGALPDTIACNYILDGSCRAGYFEEALTLLEGFQENGFKLNSHSYNTIIYKLCKDSYPERALELLPRMLKRNVLPAVVNYSTLISAFAKQSNLKRAMRLFTRMVKVGITFNAATYTILMSMFSHSHKMHEAYGIFKEMKARALHPDQISYTTLIAGFCKNGEIKKAWALFEEMSREGVLPNVTTYTCMIDGFCKSNRIDLATWLFDKMSRDSVIPDVVTYTVLIAWYHNHGYIDQAHKLYDEMKENDILPDDITHSVLGLKAGAVPKGQEDEFTCRKMLNHHAEAVLDVHKLFLKIHSSFKDGYSDDTGGKTAGKRMINTRQKAADFHSLLKDVLMDFGERTKADVVDWGMDIFAESDASSPELLFTGV 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00893 794 Pfam PPR repeat family 570 619 IPR002885 -
Pste1g00893 794 Pfam PPR repeat family 256 304 IPR002885 -
Pste1g00893 794 Pfam PPR repeat family 146 195 IPR002885 -
Pste1g00893 794 Pfam PPR repeat family 430 479 IPR002885 -
Pste1g00893 794 Pfam PPR repeat family 500 547 IPR002885 -
Pste1g00893 794 Pfam PPR repeat family 640 683 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Pste1g00893 794 Pfam PPR repeat 399 425 IPR002885 -
Pste1g00893 794 Pfam PPR repeat 114 137 IPR002885 -
Pste1g00893 794 Gene3D Tetratricopeptide repeat domain 202 319 IPR011990 GO:0005515
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Pste1g00893 794 Pfam PPR repeat 217 245 IPR002885 -
Pste1g00893 794 Pfam PPR repeat 323 351 IPR002885 -
Pste1g00893 794 Pfam PPR repeat 357 388 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Pste1g00893 794 SUPERFAMILY TPR-like 375 597 IPR011990 GO:0005515
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 364 396 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 328 361 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 505 536 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 223 246 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 573 607 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 539 571 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 468 500 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 609 642 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 399 432 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 434 466 IPR002885 -
Pste1g00893 794 NCBIfam pentatricopeptide repeat 643 676 IPR002885 -
Pste1g00893 794 Gene3D Tetratricopeptide repeat domain 101 201 IPR011990 GO:0005515
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Pste1g00893 794 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 75 441 - -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Pste1g00893 794 Gene3D Tetratricopeptide repeat domain 320 390 IPR011990 GO:0005515
Pste1g00893 794 Gene3D Tetratricopeptide repeat domain 391 459 IPR011990 GO:0005515
Pste1g00893 794 Gene3D Tetratricopeptide repeat domain 566 634 IPR011990 GO:0005515
Pste1g00893 794 Gene3D Tetratricopeptide repeat domain 460 565 IPR011990 GO:0005515
Pste1g00893 794 Gene3D Tetratricopeptide repeat domain 635 690 IPR011990 GO:0005515
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Pste1g00893 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00893 197 683 Glycosyltransferase AT1G05670 31.493 5.74e-73 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00893 1 2754789 2760537 Pste1g00893 1 2754789 2760537 ECH