Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00870 TGGAATTGGAACCGCTGAAAGTTTTTTAATTTCCATACAAATCATATTGTAGTAATTAATAATATTGATGATGATAATAACAAGGAGAAGAATCTGTTTCTCTCACTGATAAGCATGGAAGCACTTTTCAATGACCAAATCCAATTCTCTGTTCATGATCACATCTTTTTTTAACCAGTTCCATCTTTCCCTTGGACTGCTCCCTTCACTCACAAGTCACAACTCACAAATCTCTCTTAGACCGGATGATACCCCTTGGGATGGAGGTGCATTTAAATTAACACTTCAGTTTACCGAGGATTATCCTAATAAGCCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACATATATGCAGATGGAAGCATATGCTTGGATATTTTACAAAATCAATGGAGCCCGATTTATGATGTAGCTGCGATACTTACTTCAATTCAGTCGTTGCTTTGCGATCCAAACCCAAACTCTCCAGCGAATTCAGAAGCTGCTCGGATGTTTAGTGAAAACAAACGTGAATACAATAGAAGAGTACGAGAGGTTGTTGAGCAGAGCTGGACTGCTGATTAAAAGGTTGTCAAATGATAATGATCTGATATTGAATAACCTTAAGTACTTAAAAGAACAATTGTGTTTTGTAAACCTTGACAATGCGTTTGTTCAAACTTGTATGAATGGATGTTCTACCTTATGATCTTTATGTTGTGCAGAATCGTGTTTTGTCCAACACTTCCC 739 0.3708 MTKSNSLFMITSFFNQFHLSLGLLPSLTSHNSQISLRPDDTPWDGGAFKLTLQFTEDYPNKPPTVRFVSQMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWTAD 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00870 147 SUPERFAMILY UBC-like 33 145 IPR016135 -
Pste1g00870 147 Gene3D Ubiquitin Conjugating Enzyme 27 147 IPR016135 -
Pste1g00870 147 CDD UBCc 38 140 IPR000608 -
Pste1g00870 147 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 145 IPR000608 -
Pste1g00870 147 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 144 - -
Pste1g00870 147 Pfam Ubiquitin-conjugating enzyme 37 139 IPR000608 -
Pste1g00870 147 FunFam Ubiquitin-conjugating enzyme E2 2 33 147 - -
Pste1g00870 147 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 72 87 IPR023313 -
Pste1g00870 147 SMART ubc_7 3 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00870 Pste-Chr1 2684348 2688099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00870 39 115 Miscellaneous Gene Families AT1G17280 31.707 5.41e-07 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00870 1 2684348 2688099 Pste1g00870 1 2684348 2688099 ECH
Pste1g00870 1 2684348 2688099 Pste6g02520 6 12468027 12470914 PCT