Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00733 GTCATTGCTTTCAATTCATGCAATAAACTTAGTGTTAGTGACCTGAGCATTGTTAATAGTCCAAAAACTCACTTAAAAATCAGTAATTGTCAGGGTGCTCACTTTTCTTATATTTCTATTAGTGCTCCTGGTTCTAGTCCTAACACTGATGGAATTGACATTTCTGATTCCAAAAATATCATCATAACCAATTCCAAAATAGCATCTGGTGATGATTGTATTTCTGTTGGAAGTGGCAGTTCTTACATCAATATTTCTGGGATTGCTTGTGGGCCTGGTCATGGAATAAGCGTTGGAAGCCTGGGTAAGAATCATGATACAGTCTCTGATGTTTACGTAAAAAATTGCAAATTCACGGGCACTACAAATGGAGCAAGAATCAAGACATTTCCCGTAAGTAACAATTTATAG 411 0.365 VIAFNSCNKLSVSDLSIVNSPKTHLKISNCQGAHFSYISISAPGSSPNTDGIDISDSKNIIITNSKIASGDDCISVGSGSSYINISGIACGPGHGISVGSLGKNHDTVSDVYVKNCKFTGTTNGARIKTFPVSNNL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00733 136 Gene3D - 1 136 IPR012334 -
Pste1g00733 136 SUPERFAMILY Pectin lyase-like 2 130 IPR011050 -
Pste1g00733 136 Pfam Glycosyl hydrolases family 28 2 131 IPR000743 GO:0004650|GO:0005975
Pste1g00733 136 ProSitePatterns Polygalacturonase active site. 87 100 IPR000743 GO:0004650|GO:0005975
Pste1g00733 136 PANTHER - 2 133 - -
Pste1g00733 136 SMART pbh1 108 129 IPR006626 -
Pste1g00733 136 SMART pbh1 30 56 IPR006626 -
Pste1g00733 136 SMART pbh1 57 78 IPR006626 -
Pste1g00733 136 SMART pbh1 80 100 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00733 Pste-Chr1 2292956 2294086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00733 2 130 Glycoside Hydrolase AT3G15720 55.725 3.11e-43 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00733 1 2292956 2294086 Pste1g00733 1 2292956 2294086 ECH