Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00542 GAATATGAGAAAGAAACTCACTGTGTCACCACTTATCTCAAGTTGGTAGGCTACTCTGCTGTGGAATCATGTAGCTACCTCTTTTGTTCACCCATGGATGCTTACGAAGCTACAAGAATTGTATTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATAATGGGTTTACTTCTGCTTCAAGATCATGGTGAGAAAGAAATTATTAGATTGGCATTTGGTCCAGAAGCACTTTTTCATTCCGTGATTGTTAAAGCTCGCAAGGAGTTGGGTTTACCTTCCACACCCTCTACTCTTCCTTCTCCTTCTCCCTTCCTTTCTAGGCAAACCTCTCCTTCTTCAAGGCTTAGTGGTATCAACCTCCCTCCTTCTCTCGCTATCCCAAACCCTTCTACTTCTACTTCATGGCCTACCATGTCTGAGCTTCAATCCTCAGATGATTTGATGAGCCCTAACAATTTGCTTCTTGCTTCTTCCATTTCTAACTCTTCCTTACCTTTCTATGCAAATGGAGGCTCAGATCCAAGTGATGACTTCCAACTTCAAGACCAGCTTTCTTTCCTCAATGATGCTTCTCCCACTAGTACTGCTCTTGCCAACAAGAACAACCCTGATTTCTTTTACCCTCCTCCCTCAGACTTGTCTAGTCCTACTGCTGCTGACCCTACTCTCTTTCCTTCCTACGCTTGGGGAGGCTCTCTTCATCGTCGGAGTTGCTCAGTTAATGATGCTTGTTTGGGCTCTGAGGACCTTAATTCTGGTTTAGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGCTACTGTAAGAATGGCACAAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGGTTCTGCTGCAATGGTGGGTTCCCCTAGCAAGATTGGGCTGGTGGAGCAGTGCCATGAGCTCTTAAGATCCAAATCTGCTCAGCAACACAGATTGACTGCTGCTTCTCAGTTCATGGCCACTTCCACTTTTCCATACTCTCCGAAATGCATGAATTTCCTGTTGCAGCAGCAGCAACAGAATGATAGTCAAAGAGCGGTAGCTGCAGCTCTGATGATGAGTGAGGATTTGCAGAAGTTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGAATGGTTAACCCTGCTTCCAGGCAGATCTACCTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGATGTAAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTCCTTTATCCGGAGACTGTGAAGCTTATTCTTTCTAAAGGAAACCCTCATTTTGTGTGTGATGCTAGAGTGCTAGTTAAGCCTTACAAGGAGAAGGGCAAAATCCCAGACAAGAAGCAGCAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCGTGTGGTACTCCTACTGGACTAGATGCCAGAGACCAATTTGATCTTCAACTTGGTGGCAGAATGTTGTACAATACTCAAGACATGCTGTGGGGGAGGAAGCTGGAGGAGCATACTGATTTGCAGCAAGCTCTTGAACTTCAAAGTAGGAGGCTTATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCTCTCTCCACTGGAAGTCCAATTCCTTCTCCAACCCACGCTCCTAACATGTTCAACCAAAATCTTATTCATCCTTCCTTGCATACCAGTTCAGAGGCTCCAAAGGAGAGTGGTTCAACTTCTGTTTCAGCTAGTACTACTTCAGTTTCTGCTGGTCAAGAGCTAGTTAACATTTCTGTTGGCATGGAAGTGGTTGTCAATGGAGAGAATGGATATAATGAAGGCAATGGCAAGCCGACCTCTAGTCATGAAGATAGTGATTTGCAAGAATGTTTGGAGCACAATCTCCCTGAGAGCCCTTTTGCTTCCCCAACAAAAACTGTTGGAGACTTCATGGCTCCTTTCTCCAATGGACCCAATGAGGCCATTGATGCAGATGCCTCAGCTACATCTGCGAACTCCAAATTTGGTACTAGCACATTACTTCCTCCAGCATCTGTTCTTGACATGGGAACTTTCAAATCCTTTAACTGTCAAATACCAAGGTTCTCTTCTGGCCATGGAACTATTGGGATGCACTGGTGGACCGATTGGCATTTAGCTTCCCAAGTTCAGATGACTAAACAATCCTGGACAAATCTGATGCGAATCACCACCTCCATCTCCAAGATGGCCCTCACCATCAATCATGAATACTATACTACTTACTACCATACAAAATGCATACGGAAAAGGCAGTTGAGTAAAGGAAGTGGGGCAGGCATTCCCCCTCTTTCATATCTTTGTACAGCTGGAGCATTTCCCAGAGAAAGCATGCATATGCGTAGACGAAGTGGTAAAACCGTAAAGGCGAAGATGTTGGATGTTATGTTTTATGAGTCCTGTTTGTACTTCTATCTACTTGCTATACACAGTAATCAACCCAGACAGAAAAGAGAAAGAATTAAAAAGAAGAATCGAAATGGAAAGAATGGTGGTCCACAAAGCACACCATCACATGGGGTTGCTGACAATGCAAGTGGGCCATACACATTTATATAA 2637 0.4448 EYEKETHCVTTYLKLVGYSAVESCSYLFCSPMDAYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEIIRLAFGPEALFHSVIVKARKELGLPSTPSTLPSPSPFLSRQTSPSSRLSGINLPPSLAIPNPSTSTSWPTMSELQSSDDLMSPNNLLLASSISNSSLPFYANGGSDPSDDFQLQDQLSFLNDASPTSTALANKNNPDFFYPPPSDLSSPTAADPTLFPSYAWGGSLHRRSCSVNDACLGSEDLNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGSAAMVGSPSKIGLVEQCHELLRSKSAQQHRLTAASQFMATSTFPYSPKCMNFLLQQQQQNDSQRAVAAALMMSEDLQKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFLYPETVKLILSKGNPHFVCDARVLVKPYKEKGKIPDKKQQQQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMLYNTQDMLWGRKLEEHTDLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHAPNMFNQNLIHPSLHTSSEAPKESGSTSVSASTTSVSAGQELVNISVGMEVVVNGENGYNEGNGKPTSSHEDSDLQECLEHNLPESPFASPTKTVGDFMAPFSNGPNEAIDADASATSANSKFGTSTLLPPASVLDMGTFKSFNCQIPRFSSGHGTIGMHWWTDWHLASQVQMTKQSWTNLMRITTSISKMALTINHEYYTTYYHTKCIRKRQLSKGSGAGIPPLSYLCTAGAFPRESMHMRRRSGKTVKAKMLDVMFYESCLYFYLLAIHSNQPRQKRERIKKKNRNGKNGGPQSTPSHGVADNASGPYTFI 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00542 878 SUPERFAMILY CCCH zinc finger 259 281 IPR036855 GO:0046872
Pste1g00542 878 SUPERFAMILY RNA-binding domain, RBD 402 486 IPR035979 GO:0003676
Pste1g00542 878 Gene3D - 251 350 - -
Pste1g00542 878 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 397 468 - -
Pste1g00542 878 ProSiteProfiles Zinc finger C3H1-type profile. 256 283 IPR000571 GO:0046872
Pste1g00542 878 Gene3D - 389 486 IPR012677 -
Pste1g00542 878 MobiDBLite consensus disorder prediction 580 602 - -
Pste1g00542 878 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 402 446 IPR000504 GO:0003723
Pste1g00542 878 CDD RRM_AtC3H46_like 392 461 IPR034365 -
Pste1g00542 878 MobiDBLite consensus disorder prediction 465 492 - -
Pste1g00542 878 SMART c3hfinal6 258 282 IPR000571 GO:0046872
Pste1g00542 878 SMART rrm1_1 391 461 IPR000504 GO:0003723
Pste1g00542 878 MobiDBLite consensus disorder prediction 841 878 - -
Pste1g00542 878 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 32 659 - -
Pste1g00542 878 MobiDBLite consensus disorder prediction 854 869 - -
Pste1g00542 878 MobiDBLite consensus disorder prediction 95 146 - -
Pste1g00542 878 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 281 IPR000571 GO:0046872
Pste1g00542 878 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 390 466 IPR000504 GO:0003723
Pste1g00542 878 MobiDBLite consensus disorder prediction 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00542 Pste-Chr1 1746979 1751117 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00542 1 1746979 1751117 Pste1g00542 1 1746979 1751117 ECH