Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00353 ATGAGAACCCGTTTTCACTATCTTCCATTACTTTTATTCACCCTATTGGGCCAAACTAGACCCGATCCAGACCCACTTCAAGATTATTGTGTTGCAGATAACAAAAACGAATTTTTCATTAATGGGGTGCCTTGCATCAACCCAGATAAAGCTTCCTCATCGAATTTTGTGACATCTGCTTTGTCCAAAGTTGGCAACACCAGTAACCAATTTGGCTTCAGTGTCACAGCCACAAACACTCTTAACCTTCCTGGGCTTAACACCTTGGGCCTGATTTTGGTCCGAGTTGATATAGCGGCTAATGGAATCGTCCCACCTCACTCGCATCCACGGGCCTCGGAAGTGACCACTTGCCTTAAGGGCCTGCTGCTTGTGGGCTTTGTTGACACAAGTAACCGTGTGTTTACCCAGAACTTGAAGCCCGGTGAGTCATTTGTTTTCCCAAAGGGCCTGGTCCATTTCTTGTTCAATCGAGATTCGAGGGAACCAGCACTGGCCCTGTCTGGTCTCAATAGCCAGAACCCAGGTGCACAAATTGCATCACTTGCAACATTTGCTACCACGCCCCCTATTCCTGATGAAATTCTTAAGAAGGCTTTCCAAATTACCGCCAGAGAAGTGGAAATTATTCGTAGAAACCTTGGAGGATGA 651 0.4639 MRTRFHYLPLLLFTLLGQTRPDPDPLQDYCVADNKNEFFINGVPCINPDKASSSNFVTSALSKVGNTSNQFGFSVTATNTLNLPGLNTLGLILVRVDIAANGIVPPHSHPRASEVTTCLKGLLLVGFVDTSNRVFTQNLKPGESFVFPKGLVHFLFNRDSREPALALSGLNSQNPGAQIASLATFATTPPIPDEILKKAFQITAREVEIIRRNLGG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00353 216 CDD cupin_OxOx 22 214 IPR001929 GO:0030145
Pste1g00353 216 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 20 207 - -
Pste1g00353 216 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Pste1g00353 216 SMART Cupin_1_3 59 208 IPR006045 -
Pste1g00353 216 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Pste1g00353 216 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Pste1g00353 216 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Pste1g00353 216 FunFam germin-like protein subfamily 2 member 1 21 216 - -
Pste1g00353 216 Pfam Cupin 62 207 IPR006045 -
Pste1g00353 216 SUPERFAMILY RmlC-like cupins 53 214 IPR011051 -
Pste1g00353 216 Gene3D Jelly Rolls 21 216 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00353 Pste-Chr1 1248320 1248970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00353 22 215 Miscellaneous Gene Families AT5G39130 44.444 1.42e-53 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00353 1 1248320 1248970 Pste1g00353 1 1248320 1248970 ECH