Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00272 GCAAAAGTCAGGGAAGCTGCCACCAACACAGAGGATGACTTGGAGGAAGGATTCTGCGCTTCAAGATCACTATCTTTTTTCCTCACGCCTCTTCCTTCCCTTTCCTTCCTAAAACAAGGGTGGCGAACGAAATTGGTTGACTTGGTTGGTGGTTACTACGATGGTGGTGACAACGTGAAATTCAACTTTCCAATGGCATTTTCAGCGACGATGCTGGCGTGGAGTGTTATAGAGTTTGGAAAATACATGGGTGCAGACCTTAAACATGCGGGTACGGAGTATTTGATGAAAGCCACAAGCATCCGAGGAATAGTGTTTGCACAAGTGGGTGATCCATATGCTGATCACAATTGCTGGGAGAGACCTGAAGACATGGACACCCCCAGAACTGCCTTTGCTGTTAGCAGGGACCACCCTGGCTCTGAAGTTTCTGCAGAGATACAACTGCTCTTGCCGCCTCTTCAATTGAAATATCATATTGCCTATTCTTCAAGACTTCTCCGAAGGGCTATAAGGGTATATCCATACAACATCTTCATTTTTATTCTCACACTATTCTATTGTGATTTCAGTGGCTACCAGGTACGCCTAGCTAGCATCATCAATATTGATAGGACGAATTGGTGTGGAGAGCAGCATGGTTGTTCAAGGCCACAAAGTGCCCTTACTACTTGGATTACATTGACTAAAACTATTCAAAATCTCAAAAATTTTGCTGAATTTGGATGGGACTCAAAGGACGCCAGTATCAACGTCCTCCTTCCCAAGCTTCTGATTAACAGTAGCTCTAATTCTAAGCCTTTGATACTCAATAATGCGGACAAGTTTGTGTGTTCTGTGCTACCCAAATCACCTTTACTATCAGTCTCATACTCTCCAGGTAACTTAATTAGCCGTAATGTTCCAAAGTATATAAATATAATGAACATTAAAGTAAAGACTTGTGAGAAATCAGGTGGGCTTCTATTCAAACCTGGAGGCAGTAACATGCAGCATGCAACAGCAATCTCATTTCGGTTTCTGGTTTATGCTGGCTATTTGAGAAAAACAAATAAAGCGATAGACTGTAGGAGTCAAGTTTTTGCTTCTCCAAAACGACTTAAACAAATAGCAAGAGGGCAGGTGGATTACATACTTGGAAGCAATCCAGTGAACATGTCATACATGGTAGGATACGGACCAAAATTTCCTGAGAGAATACATCATCGTGCGTCATCATTGCAATCCATCAGCACCCTGGCCACATCAGTTGCAAAGGAGGATCCTTTTATTTTGAAAGCCAAAATCCAAACGGGAGCTGCTGTGGGGGGACCTCATTTTAAGGATTCATACACAGATTCTCGACCAGATTTTGTACGGTCTGAACCTACCACATACATCAATGCACCCCTTGTCGGTCTTTTAGCCTACTTCAATTCACATCCATCC 1428 0.4293 AKVREAATNTEDDLEEGFCASRSLSFFLTPLPSLSFLKQGWRTKLVDLVGGYYDGGDNVKFNFPMAFSATMLAWSVIEFGKYMGADLKHAGTEYLMKATSIRGIVFAQVGDPYADHNCWERPEDMDTPRTAFAVSRDHPGSEVSAEIQLLLPPLQLKYHIAYSSRLLRRAIRVYPYNIFIFILTLFYCDFSGYQVRLASIINIDRTNWCGEQHGCSRPQSALTTWITLTKTIQNLKNFAEFGWDSKDASINVLLPKLLINSSSNSKPLILNNADKFVCSVLPKSPLLSVSYSPGNLISRNVPKYINIMNIKVKTCEKSGGLLFKPGGSNMQHATAISFRFLVYAGYLRKTNKAIDCRSQVFASPKRLKQIARGQVDYILGSNPVNMSYMVGYGPKFPERIHHRASSLQSISTLATSVAKEDPFILKAKIQTGAAVGGPHFKDSYTDSRPDFVRSEPTTYINAPLVGLLAYFNSHPS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00272 476 Gene3D - 29 179 IPR012341 GO:0005975
Pste1g00272 476 Gene3D - 210 475 IPR012341 GO:0005975
Pste1g00272 476 SUPERFAMILY Six-hairpin glycosidases 43 474 IPR008928 GO:0005975
Pste1g00272 476 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 377 403 IPR018221 -
Pste1g00272 476 PANTHER ENDO-1,4-BETA-GLUCANASE 37 473 - -
Pste1g00272 476 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 444 462 IPR033126 -
Pste1g00272 476 Pfam Glycosyl hydrolase family 9 44 468 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00272 Pste-Chr1 943982 945976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00272 46 474 Glycoside Hydrolase AT1G70710 44.934 8.83e-122 363
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00272 1 943982 945976 Pste1g00272 1 943982 945976 ECH