Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g6046 ATGGCTGGCACCGGCATCCACCATTACCACCAACAATGGCCTCCGGCCGCCGCTCCTCCTCCACCTACCGCCGTTCCTTCTCCTTCCCCCGAAGAGGTTCGAACTATATTCATAACGGGACTTCCAGAAGATGTAAAAGAGAGAGAAATTCAGAACCTACTTCGATGGTTACCGGGTTTTGAAGCTTCTCAGTTGAATTTCAAAGCTGAAAAGCCTATGGGTTTTGCTCTTTTCACTTCTCCTCATCAAGCGATTGCTGCCAAAGACATTCTTCAGGAGATGCTGTTCGATCATGAATCCAAGTCCGTTCTTCACACTGAGATGGCCAAGAAAAATCTGTTTGTTAAAAGAGGAATAGGAGCTGATGCAAGTGCTTTTGATCAAAGTAAGCGGTTACGAACAGCAGGGGATTATACACATACCGCTTATGTAACCCCATCTCCTTTTCATCCTCCACCACCACCTGTTTGGGGACCACATGGATATATGGCACCACCACCTCCTCCTCCTTATGATCCATATGCAGGCTATCCTGTTGCACCAGTACCAATGCCTGCTTCAGTTTCTATAGCAGCGCCTAGCAGTTATGTTGCAGTTCAGAACACTAAAGATAATCCTCCTTGCAACACCCTGTTTATTGGGAACTTGGGAGAGAACATTAATGAGGAAGAAGTGAGGGGCCTTTTCAGTGTACAACCTGGTTTTAAGCAAATGAAGATTTTAAGGCAGGAGAGGCATACAGTCTGTTTCATTGAGTTTGAAGATGTGAATAGTGCTACAAATGTGCACCACAATCTACAGGGTGCTGTTATCCCAAGTTCTGGTTCAATTGGCATGCGGATACAATATCCTTTTTTATTGTCAAGCATGCGAAGCTTTGTTTTCTTGATTTTTCTTTCAACTCTCATGTTCATTCCCTAA 921 0.4463 MAGTGIHHYHQQWPPAAAPPPPTAVPSPSPEEVRTIFITGLPEDVKEREIQNLLRWLPGFEASQLNFKAEKPMGFALFTSPHQAIAAKDILQEMLFDHESKSVLHTEMAKKNLFVKRGIGADASAFDQSKRLRTAGDYTHTAYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAPVPMPASVSIAAPSSYVAVQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLSSMRSFVFLIFLSTLMFIP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g6046 306 SUPERFAMILY RNA-binding domain, RBD 30 271 IPR035979 GO:0003676
Psa7g6046 306 CDD RRM_scw1_like 207 284 - -
Psa7g6046 306 PANTHER CELL WALL INTEGRITY PROTEIN SCW1 7 285 - -
Psa7g6046 306 Gene3D - 197 284 IPR012677 -
Psa7g6046 306 SMART rrm1_1 210 282 IPR000504 GO:0003723
Psa7g6046 306 SMART rrm1_1 35 105 IPR000504 GO:0003723
Psa7g6046 306 MobiDBLite consensus disorder prediction 1 31 - -
Psa7g6046 306 CDD RRM_RBPMS_like 34 107 - -
Psa7g6046 306 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 285 - -
Psa7g6046 306 Gene3D - 29 115 IPR012677 -
Psa7g6046 306 MobiDBLite consensus disorder prediction 14 28 - -
Psa7g6046 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 272 IPR000504 GO:0003723
Psa7g6046 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 97 IPR000504 GO:0003723
Psa7g6046 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 284 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g6046 Psa-Chr7 490308973 490313571 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g6046 - - gmx:100817421 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6876 5 566154335 566159733 Psa7g6046 7 490308973 490313571 PCT