Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5893 ATGTTCGTTGGTTTACAAGGATCTGGGAAAACCACTACCTGTACAAAATATGCATTTTATCATCAAAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCATTTGATCAGTTGAAGCAAAATGCTACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAAAGATTCAGGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATCTTTGTCATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTCATTATCACTAAAATGGATGGCCATGCAAAGGGTGGTGGTGCACTTAGTGCTGTTGCGGCTACAAAGAGTCCTGTCATATTCATTGGAACCGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCATGGGAGATTTGTCAGGGTTCATGGACAAAATCCATGAAGTAGTTCCTATGGATCAACAGCCCGAACTGCTTCAAATGCTGTCAGATGGACACTTTACCTTGAGGATTATGTACGAGCAGTTTCAGAATATTCTTAAAATGGGTCCCATTGGCCAGGTTTTTTCTATGCTGCCCGGATTTAGTTCTGAATTAATGCCAAAAGGCCGCGAGAAGGAAAGCCAGGCAAAGATTAAGCGTTACATGACGATGATGGACTCAATGACCAATAAAGAATTAGATAGTTCAGACCCAAAGCTCATGAATGAGTCACGAATGATGCGAATAGCTCGAGGTTCTGGTCGGCAAGTTAGGGAAGTAATGGAGATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAGGGAGAAATGAGTGCCTTATCCCGAAACATGAATGCCAACCACATGAGCAAAATCCTCCCTCCACAGATGCTAAAGCAAATTGGAGGCATGGGTGGGTTACAGAGCTTGATGAAACAGATGGGATCTTCTAAGGACATGATGGGAATGTTTGGCGGTGGCGATAAGTAG 1176 0.4235 MFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFRKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIHEVVPMDQQPELLQMLSDGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNKELDSSDPKLMNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNANHMSKILPPQMLKQIGGMGGLQSLMKQMGSSKDMMGMFGGGDK* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5893 391 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 390 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Psa7g5893 391 Gene3D - 206 347 IPR036891 GO:0006614|GO:0008312|GO:0048500
Psa7g5893 391 SUPERFAMILY Signal peptide-binding domain 194 329 IPR036891 GO:0006614|GO:0008312|GO:0048500
Psa7g5893 391 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 390 - -
Psa7g5893 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 194 IPR027417 -
Psa7g5893 391 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 165 178 IPR000897 GO:0005525|GO:0006614
Psa7g5893 391 SMART SRP54_3 1 192 IPR000897 GO:0005525|GO:0006614
Psa7g5893 391 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 1 323 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Psa7g5893 391 Pfam SRP54-type protein, GTPase domain 1 192 IPR000897 GO:0005525|GO:0006614
Psa7g5893 391 CDD SRP54_G 1 190 - -
Psa7g5893 391 Pfam Signal peptide binding domain 224 323 IPR004125 GO:0006614|GO:0008312|GO:0048500
Psa7g5893 391 Gene3D - 1 181 IPR027417 -
Psa7g5893 391 Gene3D - 182 202 IPR042101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5893 Psa-Chr7 486071777 486075487 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5893 K03106 - tcc:18595318 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5893 7 486071777 486075487 Psa7g5893 7 486071777 486075487 ECH