Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5747 ATGGATCACACTAAGAAAGAAGAAGAAGAAAACCCTAAATTCTCAGCATTCCCTTTCAAACCCTACTCAATCCAAATCGATTTCATGAATGCACTCTATCAATCTCTCAACCAAGGTGGCATCTCCATGTTAGAAAGCCCAACCGGTACTGGAAAAACTATGAGTGTGATCTGTAGTGCTTTGCAATGGGTACTCGATCGACGGCGACAAGAGGAAGAAGAAAAAGCTGCAGGGTTTGTGAATGGGAAGAGTCAAGGTTCAGATGATGAACCTGATTGGTTGAGAGATTTTGTAGTAAAAAGCAATGATAAGCAATTCAAAGAGGAAAAAAGAAAGAATAAAAAGGAAAAATTTATGACTGTGTTAGGAAAATCTGATAATGATGTAAAAAGAAGTAATAATGGTGATTCAAAGAAGAAGATTGATGGGGTGGGTGATAATGAAGAGGAGTTTTTGCTTGAAGAATATGAGAGTGAAGATGAGAAAGCTCATGGTAGTAGTGTGGTATCTAAGAGGAAAGCGAGTATAAGTAGTTTTAGTTCTTCGAGTGAAGATGAGTCTAATGATGATGATGAGGATGGTGAAGAGGAGAAGAAGTTCAAGGTTTATTTTTGTAGTAGGACGCATTCGCAGCTTTCGCAGTTCGTGAAGGAGTTGAGGAGGACGGTGTTTGCTGATGAGATGGAAGTTGTGAGTTTAGGTTCCAGGAAGAATCTTTGTATTAATAAAGAAGTACTTGCAATTGGAAACTCTGCAGGCATAAACGAGCGATGCTTGGAACTCCAAAAGAAAAAGAAAAATGATGCGTCAAAAGTTAAGAACTTAAGAGTAGGTACAGGAGCACACAGAACAAAGGCCTCCTCCGGCTGTCCAATGCTTAGAAAACATAGACTGCAACGAGAATTCGGGAATGAGGTATCTCAACAAGGACCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGTTTGGTTCAGAAAGTTGATCTTGTGGTCCTACCATATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTAAATTTGAAATCCAACATTGTTATAATAGACGAGGCTCATAATTTGGCCGACTCACTCATCAGCATGTATGACTCCAAAATTACTTTGTCACAGCTAGAAAATGTGCATTGCCATGTCGAGCAGTACTTTGTGAGATTCCGAAACCTTTTGGGACCTGCTAATAGGAGATATATTCAAACTCTGATGGTCGTCATACAAGAATTTCTCCGAGTACTACTGAATGAAAAAGATGGAAATCTCATAGATTCACATCGCGATATAGAACAGGCTTCTGAAGAAAGGAAAGCCTCCGATTTTACTATGTCCATCAATGATTTTTTATTTGAACTAAATATAGACAATATCAACTTGGTCAAATTGCTAAAGTACATAAAGGAAAGTCATATCATGCACAAGGTTAGTGGCTATGGAGAAAAGCTGGCTACATTGGAGAAGGTATCAGCACTTAATATAGCAGGGGAACATGGTGAAGATGGAAGCTGTCGTTCTGCTTTCCAGGCATTAGCTGACATGTTGCTATCACTTGTAAATAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGTTCAACAAGCTTCAGGAAACAAGGTCAAGGATATATTAAATATGTTATGCTTAGCGCTGAGAAGATTTTCTCTGAGATTGTAGATGAAGCACATGCCGTTGTGTTAGTCGGGGGAACACTTCAGCCAATAGAGGAGACAAGAGAGAGACTTTTTCCATCGTTACCACCAAATCAGTTGCATTTCTTTTCTTGTGGTCATATTGTCCCTCCTGAGAGCATTATGCCAATTGCAGTTTCCCGTGGGCCTACCGGCCGCTCCTTTGATTTTAGCTACAGCTCCAGGAGCTCAGCAGACATGATGCGAGAACTAGGTCTTTTGTTATGCAACTTGATTACTGTGGTTCCCCAAGGAATTGTAGTTTTCTTCCCTTCTTTTGATTATGAAAGTCGAGTCTATGAAAACTGGGAGTCTTCTGGCATCCTCGAAAGGATTACAAAGAAGAAACGTGTCTTTAGAGAGCCTAGAAACAATATGGATGTTGAATCTGTTCTCAAAAAATACAAAGATACTATTTATACTCCATCAAGTGTGAATTCAGAAGTGAATCAAACATCTCATACTGGTGCAGTACTTCTTGCTGTTGTTGGTGCAAAGTTATCTGAAGGGATCAACTTGAGTGATGGAATGGGCCGGTGCATACTCATGGTTGGTCTGCCATATGCTAGCCCTTCTGACATTGAGTTATTGGAGAGGATAAAGCATATTGATGGTTTTAGAAATTCCAAGTCCCTTAAAAATCCTGCGTTTTCTGCTAGTTATGATGTATATGGTGGAGATATACAAGGTGGTTTTGGCATATTAAGAAGTTGCAGTTACAGGGGAAAAGAGTATTACGAGAATCTCTGCATGAAGGCTGTAAATCAATCAATAGGTAGAGCAATTCGTCACATCAATGACTATGCAGCTATTTTATTGGTTGACACAAGGTATGCATCTGATTCCTCAAAAAGGAGCTTTAACAACCCAACCACCAAGCTCCCTAACTGGATAAAAGATCGCCTTGTTTCTTCTAAAAACTATGGGGAAGTGCATAGGTTGCTGAGTCAGTTTTTCAAACTCAAAAAGACATGTTGCCAATAG 2730 0.3956 MDHTKKEEEENPKFSAFPFKPYSIQIDFMNALYQSLNQGGISMLESPTGTGKTMSVICSALQWVLDRRRQEEEEKAAGFVNGKSQGSDDEPDWLRDFVVKSNDKQFKEEKRKNKKEKFMTVLGKSDNDVKRSNNGDSKKKIDGVGDNEEEFLLEEYESEDEKAHGSSVVSKRKASISSFSSSSEDESNDDDEDGEEEKKFKVYFCSRTHSQLSQFVKELRRTVFADEMEVVSLGSRKNLCINKEVLAIGNSAGINERCLELQKKKKNDASKVKNLRVGTGAHRTKASSGCPMLRKHRLQREFGNEVSQQGPLDIEDLANLGRTMGTCPYYGSRSLVQKVDLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITLSQLENVHCHVEQYFVRFRNLLGPANRRYIQTLMVVIQEFLRVLLNEKDGNLIDSHRDIEQASEERKASDFTMSINDFLFELNIDNINLVKLLKYIKESHIMHKVSGYGEKLATLEKVSALNIAGEHGEDGSCRSAFQALADMLLSLVNKDSDGRIIISRSSSTSFRKQGQGYIKYVMLSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPSLPPNQLHFFSCGHIVPPESIMPIAVSRGPTGRSFDFSYSSRSSADMMRELGLLLCNLITVVPQGIVVFFPSFDYESRVYENWESSGILERITKKKRVFREPRNNMDVESVLKKYKDTIYTPSSVNSEVNQTSHTGAVLLAVVGAKLSEGINLSDGMGRCILMVGLPYASPSDIELLERIKHIDGFRNSKSLKNPAFSASYDVYGGDIQGGFGILRSCSYRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFNNPTTKLPNWIKDRLVSSKNYGEVHRLLSQFFKLKKTCCQ* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5747 909 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 13 893 IPR028331 -
Psa7g5747 909 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 13 893 IPR045028 -
Psa7g5747 909 MobiDBLite consensus disorder prediction 174 194 - -
Psa7g5747 909 TIGRFAM rad3: DNA repair helicase (rad3) 139 784 IPR013020 GO:0003678
Psa7g5747 909 SMART deadxpd 13 415 IPR006554 GO:0003678|GO:0016818
Psa7g5747 909 CDD SF2_C_XPD 621 860 - -
Psa7g5747 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 11 421 IPR014013 GO:0005524
Psa7g5747 909 SMART Cxpdneu3 675 862 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Psa7g5747 909 SMART ultradead3 17 450 IPR014001 -
Psa7g5747 909 Gene3D - 635 876 IPR027417 -
Psa7g5747 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 385 IPR027417 -
Psa7g5747 909 Pfam Helicase C-terminal domain 657 871 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Psa7g5747 909 Pfam DEAD_2 204 392 IPR010614 GO:0003677|GO:0003678|GO:0005524
Psa7g5747 909 Gene3D - 167 430 IPR027417 -
Psa7g5747 909 Gene3D - 18 86 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5747 Psa-Chr7 482191066 482197078 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5747 K11273 - gmx:106794132 1338.94