Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5544 ATGAAAGGGGTGCTTACGCTTCATCTATGGAATCCACCACCGCGCTTCCACACTCTCTCTCTTCCCTCTCTCTCCTCCCCCTTCCCTCTCTCAATCTCCGCCTCCTCTTCCGGCACCCAACAACAAGACCTCCTCACTCCCAAAGAGAGAAGGCGCTTAAGAAACGAGCGAAGAGAGAGCAAGAACACAACCAATTGGAGAGAAGAAGTAGAAGATAGACTCAGTAAGAAGACTAAGAAGGAGAAGAAGTCATGGATGGATGAACTAAACCTTGATAATCTCATGAAATTGGGTCCTCAATGGTGGGTTGTACGCGTTTCGCGGCTTAAGGCTGAGTATACTGCGGAAGCACTCGCTCGTTCGTTGGCCAAGTTTTTCCCTGATACAGACTTTAAGGTATATGCTCCAGTTATCCATGAAAAAAAGAAATTGAAGAATGGTTCCATCTCCGTAAAACCAAAGCCTCTTTTCGCGGGTTGTATTTTTCTGAGATGTGTATTGAACAAACCATTGCATGACTTCATAAAAGAGTATGATGGTGTTGGTGGCTTTATTGGATCCAAGGTTGGAAATACAAAGAAAATGATTAATAAACCAAGGCCAGTATCTGAGGTTGATATGGAATCAATTTACAAACAGGCAAAAGTGGAGCAAGAAAATGCTGACAAAGCATTTGAGGAAGAGCAAAAGAAAACTGCTGTAATCTCTGGGAATCCGAATTCAGAGATAGACTCAGATGTTTCAAAAGCTATTGTTGATTCTAAGCCTATAAGAGGCTCTAGAAAAACATCTAACCAACTCACAGTCACAGAAGAAACTTCATCTGTTAAAAAAAACGTTAAACTTACCACAGGTTCCACTGTTCAAATTATATCCGGATCATTTTCAGGTTTTGCAGGCACCCTCAAGAAGCTGAGCCGCAAAACCAAAATGGCGACGGTGCATTTGACCATATTCGGGAAAGAGAACATAGTAGACTTAGATGTTAGTGAAATTGCTCCAGAGACTAACTAA 1014 0.4211 MKGVLTLHLWNPPPRFHTLSLPSLSSPFPLSISASSSGTQQQDLLTPKERRRLRNERRESKNTTNWREEVEDRLSKKTKKEKKSWMDELNLDNLMKLGPQWWVVRVSRLKAEYTAEALARSLAKFFPDTDFKVYAPVIHEKKKLKNGSISVKPKPLFAGCIFLRCVLNKPLHDFIKEYDGVGGFIGSKVGNTKKMINKPRPVSEVDMESIYKQAKVEQENADKAFEEEQKKTAVISGNPNSEIDSDVSKAIVDSKPIRGSRKTSNQLTVTEETSSVKKNVKLTTGSTVQIISGSFSGFAGTLKKLSRKTKMATVHLTIFGKENIVDLDVSEIAPETN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5544 337 Gene3D - 99 217 IPR036735 GO:0006355
Psa7g5544 337 SMART nusgn_4 98 214 IPR006645 GO:0140673
Psa7g5544 337 Pfam Transcription termination factor nusG 100 210 IPR006645 GO:0140673
Psa7g5544 337 Coils Coil 211 231 - -
Psa7g5544 337 CDD KOW_NusG 285 332 - -
Psa7g5544 337 MobiDBLite consensus disorder prediction 32 73 - -
Psa7g5544 337 PANTHER TRANSCRIPTION ANTITERMINATION PROTEIN RFAH 33 334 - -
Psa7g5544 337 CDD NGN_plant 100 210 - -
Psa7g5544 337 Gene3D - 283 334 IPR014722 -
Psa7g5544 337 SUPERFAMILY Translation proteins SH3-like domain 280 332 IPR008991 -
Psa7g5544 337 PANTHER RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG 33 334 IPR043425 -
Psa7g5544 337 MobiDBLite consensus disorder prediction 45 73 - -
Psa7g5544 337 SUPERFAMILY N-utilization substance G protein NusG, N-terminal domain 99 213 IPR036735 GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5544 - - lja:Lj0g3v0333779.1 439.499