Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5355 ATGACTGAAGTTTTGGAACTGAGGCAGACCATAGCGCGCCTGCACCGCCATCTTCACTGCTTCTCCGGCCCTCCACCGCTGAAACCTCCGCCACCATCAACCGTCCCGCGCCTCTCGGACTCACTTTCGGACTCACTTTCGGACCGCCGTCACTCAGCATTGGCTTCTAAGGACATCAAAATGGAAACTTTGGAAAATCTCGGAAACCATGCCGAGTTCAATTCTCAAAGTTCTGGAGGTGGTGATAATAATGCACAAATTTTGCCGACTAAGAAGACGAAGAAAAGGAAAGATGGAGGTGATGATAGTAATGTACTAATTTTGCCAAGTAAGAAGAAGAAAAAGAAAGGGATGGAACAGGAGCGCGGCAAAGTCCATTCAAGTAAGAAGCAGAGATTGAGCAAAACTCAGAAAAGGAAGCTGAAGAAGTCAGAGGATGACAAGGGTAAACAACTTTTGATGGAAAAAGCCATTAAGACATTAAATAACAACATGCTTCCTGAGTACGCGTTTCCTCTTTTGCAGTCATCATGCAATATCAACCGGGAGGAGACTGTGAAGGAAAAGCGCAGGAGAGCAGTACATTTATTAAAAGAAGGATTGGAGATTCCACATGATAATAACCTGTCCAAGAAACAGGATTTTCCATGTATAACTGAACCTGAGTCAGAAGACGAAGAGAATCATTTGGTGCAGGAATCTAAAGAAAATGACTTCATACAACCTTTTAGAACTGAAGGAGAAATCTTGTATACAACATCCGCTCCCCTGGAGTCCTCTCAAGAACCAGTTCATGGAAATGAAGTTGTAAATTATGAATCTGACATTTCCACTGACAAGCAACCTGATGAAATCAGAAGTTCTTCTCCCATTTCTCGTTCTATTACCGAGATAAAAAGCACAAAGTCAAAGGACAAGACAGATGAAAACCCTGCCGCCAATTTCAGCGAATTGAGCAACCTTCCAATTGTTTCACAGAGGCTTTTGACTACTCCTACTGTTGTCCATGTATACAGGCCATCAGAGGTTGAAGAGAAAAGAAAGGATCTTCCTATAGTAATGATGGAACAAGAGATAATGGAAGCTATAAATTACAATTCCAGTGTCATCATATGTGGAGAAACTGGATGTGGTAAAACAACTCAGGTTCCCCAGTTTCTTTATGAAGCTGGATATGGTTCAAGCAAGTTCCACGCCCGCAGTGGTGTTATTGGTGTCACTCAACCACGTCGGGTGGCTGTTCTTGCCACAGCAAGGCGTGTGGCGTATGAGCTTGGTGTTCGTCTAGGAAAGGAGGTTGGCTTTCAAGTTAGGTATGACAAGAGAATTGGAGAAAATTGCTCTATCAAGTTTATGACTGATGGCATTTTGCTACGAGAAGTTCAGAATGATATTTTATTGAGGCGTTATTCCGTCCTAATTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATTGGGATGCTCTCGCGTGTAATTAGAACTCGCCAAAAGATTTATAATGACCAGCAGAAGATGATCCTTTCGGGAGAAAGTATAAGTCCTGAAAAAATGGTTTTTCCATTAAAACTTGTGCTGATGAGTGCCACCTTGCGTGTACAAGACTTTACTTCTGGAAAATTATTCTACACTCCCCCACCTGTGATAGAAGTTCCTACAAGGCAGTTTCCAGTTACCAAGTATTTTGCAAAAAAAACCGAGATAACAGATTATATTGGTGCAGCGTATAAGAAGATCCTGGCAATTCACAAGAGGCTGCCATCTGGGGGAATACTTGTCTTTGTCACTGGACAAAGGGAAGTAGAGGACTTGTGCAGGAAGCTACGCAAAGCTTCAAAGGAGTTTATCATGAAAAAAGTTAAAGGACCTGTGGAAAATGATGGCACTGTGGTCCATGAAACAAGTTCTATTGAGGGAATAAATATTAATGAGATTAATGAAGCATTTGAGGTGTCTGGAAGTTCATCCATCCAGCAAACTGATAGGTTTAGTAGTTATGATGAAGATGACAATAATTTTGATGCGAACGAATCTGATTCTTATGATTCAGAAACGGAGAGTGAGTTGGAATTCAATGATGATGATGATAATAATCACAAGGATTCAGAAAACAATAGTAATATTGTGGATGTCCTGGGAAAGGAAGGAAGTCTTGCTTCATTGAAGGCTGCTTTTGAAAGCTTGTCTGGGCAAGCTTCGGTGAATACTGGAGATGGTTTAGACGCATCAAAAGTTTGCAGGGAGAAAATAACTAGAGAAAACCAGAGTTCTTCTCCAGGTGCACTCTTTGTTCTACCACTTTATGCTATGCTGCCTGCTGCAGCTCAACTTCGTGTATTTGAAGAAGTTAAGGAGGGAGAGAGGCTTGTTGTTGTTGCTACAAATGTTGCAGAAACATCTTTAACAATTCCAGGGATAAAGTATGTGGTTGATACTGGAAGGGAAAAGGTAAAGAGTTACAACTCCTCTAATGGCATGGAGACATATGAAGTGAAATGGATAAGTAAGGCATCTGCTGATCAACGTGCAGGCAGAGCTGGAAGAACTGCAGCAGGGCATAGTTATCGCCTATATTCTTCTGCAGCCTTTAATAATGAGTTTCCTGAGTTCTCTCCCGCTGAAGTTGAGAAAGTGCCTGTTCATGGTGTTGTCCTTCTCTTGAAATCCATGAATATTAAGAAGGTTGCGAATTTCCCGTTTCCTACTTCTCTTAAGGCTTCTTCCCTGCTTGAAGCTGAGAATTGCTTGAGAGCTCTTGAAGCACTTGACTGTAAGGATGAACTTACACTTTTGGGAAAAGCCATGGCACTTTATCCTTTGAGTCCTCGTCATTCTAGAATGATCCTTACTGTTATAAAAAATACAAGACACAAGCATGTTCGAAGTTCAAGTCTGCTTTTGGCATATGCTGCTGCAGCTGCTGCTGCTTTGAGTTTACCAAATCCTTTTGTAATGCAATATGAAAGAAATGATAGCAGCGAAGGTTCAGAAATGTCCAAGAAATCTAGCGTGGGAGACAATGAGAACAATATTGATAAAAAAGAAAAGACAAAGAGAAAGAAACTTAAAGAAACCTCTAAAGCTGCTCGTGAAAAATTTCGAATTGTCAGTAGTGATGCCCTAGCCATAGCATATGCCTTGCAGTGTTTTGAATATTCACAGAATTCGGTACAATTTTGTGAAGATAATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTAGACAGCAGCTACTCAAACTGGTCTTTTATCAGAGTGATAAAGGTGGTTTAGAACAAGAGTATTCATGGACTCATGGAACTCTAGACGATGTGGAACGTGTTTGGCAAGTTTCTTCTGTGCACTATCCTCTTCCTCTGGTTGAGGAAAGGCTCCTTTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTCCAATTTCTTATGGGCCCACTGATGGAGAGACGATTTCTCGTGTTGGTAGGTATCAATCATGCATGGTTGATGAAAGTATTTTCATTCATCGTTGGTCATCAGTTTCTACTGCACGCCCTGAGTTTCTGGTTTACAATGAACTATTAGAGACAAAAAGACCAAACAAAGAAGGGGAGACAAGTGCAAAGAGAGCATACATGCATGGAGTAACGAGCGTCGATCCAACTTGGCTAGTTGAGAATGCCAAGTCTTCGTGCACCTTCTCTCCACCCCTGACAGATCCCAGACCATTTTATGATGCGCAGTCTGACCAAGTAAAATGTTGGGTCATCCCAACCTTTGGGCGCTTCTGTTGGGAGCTTCCAAAGCACTCATTACCCATTAACAATGTTGAGCTTCGGGTGCAGGTGTTTGCCTATGCTTTACTCGAAGGTCAGGTGTGTCCATGTTTGAAATCCGTTCGAAAATACATGTCTGCCCCTCCTGAAAGTATTCTGAGGAGAGAAGCTTTTGGTCAAAAAAGGGTGGGAAATCTGTTGAGTAAGTTAGAGAGCAAGTTGATTGATAGCTCTGCCAAGTTAAGAACGGCGTGGAAGGAGAATCCAAGAGAATTATATTCAGAAATTTTGGATTGGTTTCAACAGGGTTTTAACAATCACTTTCAAAAGCTATGGTTACAAATGCTTCGCGAAGTGCTGCAAGAAACACAAGAACAACCTCCGAATAATAGTTTTAAAAGAAAGTCTAAAGGAAAATCTAAATCGGGTCAATGA 4215 0.4157 MTEVLELRQTIARLHRHLHCFSGPPPLKPPPPSTVPRLSDSLSDSLSDRRHSALASKDIKMETLENLGNHAEFNSQSSGGGDNNAQILPTKKTKKRKDGGDDSNVLILPSKKKKKKGMEQERGKVHSSKKQRLSKTQKRKLKKSEDDKGKQLLMEKAIKTLNNNMLPEYAFPLLQSSCNINREETVKEKRRRAVHLLKEGLEIPHDNNLSKKQDFPCITEPESEDEENHLVQESKENDFIQPFRTEGEILYTTSAPLESSQEPVHGNEVVNYESDISTDKQPDEIRSSSPISRSITEIKSTKSKDKTDENPAANFSELSNLPIVSQRLLTTPTVVHVYRPSEVEEKRKDLPIVMMEQEIMEAINYNSSVIICGETGCGKTTQVPQFLYEAGYGSSKFHARSGVIGVTQPRRVAVLATARRVAYELGVRLGKEVGFQVRYDKRIGENCSIKFMTDGILLREVQNDILLRRYSVLILDEAHERSLNTDILIGMLSRVIRTRQKIYNDQQKMILSGESISPEKMVFPLKLVLMSATLRVQDFTSGKLFYTPPPVIEVPTRQFPVTKYFAKKTEITDYIGAAYKKILAIHKRLPSGGILVFVTGQREVEDLCRKLRKASKEFIMKKVKGPVENDGTVVHETSSIEGININEINEAFEVSGSSSIQQTDRFSSYDEDDNNFDANESDSYDSETESELEFNDDDDNNHKDSENNSNIVDVLGKEGSLASLKAAFESLSGQASVNTGDGLDASKVCREKITRENQSSSPGALFVLPLYAMLPAAAQLRVFEEVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKSYNSSNGMETYEVKWISKASADQRAGRAGRTAAGHSYRLYSSAAFNNEFPEFSPAEVEKVPVHGVVLLLKSMNIKKVANFPFPTSLKASSLLEAENCLRALEALDCKDELTLLGKAMALYPLSPRHSRMILTVIKNTRHKHVRSSSLLLAYAAAAAAALSLPNPFVMQYERNDSSEGSEMSKKSSVGDNENNIDKKEKTKRKKLKETSKAAREKFRIVSSDALAIAYALQCFEYSQNSVQFCEDNALHFKTMDEMSKLRQQLLKLVFYQSDKGGLEQEYSWTHGTLDDVERVWQVSSVHYPLPLVEERLLCQAICAGWADRVAKRIPISYGPTDGETISRVGRYQSCMVDESIFIHRWSSVSTARPEFLVYNELLETKRPNKEGETSAKRAYMHGVTSVDPTWLVENAKSSCTFSPPLTDPRPFYDAQSDQVKCWVIPTFGRFCWELPKHSLPINNVELRVQVFAYALLEGQVCPCLKSVRKYMSAPPESILRREAFGQKRVGNLLSKLESKLIDSSAKLRTAWKENPRELYSEILDWFQQGFNNHFQKLWLQMLREVLQETQEQPPNNSFKRKSKGKSKSGQ* 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5355 1404 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 471 480 IPR002464 -
Psa7g5355 1404 CDD DEXHc_DHX37 350 554 - -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 993 1026 - -
Psa7g5355 1404 Gene3D - 904 1050 - -
Psa7g5355 1404 CDD SF2_C_RHA 731 861 - -
Psa7g5355 1404 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 360 552 IPR014001 -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 993 1008 - -
Psa7g5355 1404 Gene3D - 299 557 IPR027417 -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 273 310 - -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 72 149 - -
Psa7g5355 1404 PANTHER - 327 1389 - -
Psa7g5355 1404 PANTHER - 101 206 - -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 72 88 - -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 673 695 - -
Psa7g5355 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 959 IPR027417 -
Psa7g5355 1404 SMART ultradead3 348 564 IPR014001 -
Psa7g5355 1404 SMART ha2_5 914 1047 IPR007502 GO:0004386
Psa7g5355 1404 MobiDBLite consensus disorder prediction 283 297 - -
Psa7g5355 1404 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1131 1229 IPR011709 -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 21 53 - -
Psa7g5355 1404 PANTHER ATP-DEPENDENT RNA HELICASE 101 206 - -
Psa7g5355 1404 PANTHER ATP-DEPENDENT RNA HELICASE 327 1389 - -
Psa7g5355 1404 SMART helicmild6 751 853 IPR001650 -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 1009 1026 - -
Psa7g5355 1404 Gene3D - 739 873 IPR027417 -
Psa7g5355 1404 Gene3D - 558 650 IPR027417 -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 1384 1404 - -
Psa7g5355 1404 Pfam DEAD/DEAH box helicase 357 538 IPR011545 GO:0003676|GO:0005524
Psa7g5355 1404 MobiDBLite consensus disorder prediction 654 710 - -
Psa7g5355 1404 MobiDBLite consensus disorder prediction 89 127 - -
Psa7g5355 1404 Pfam Helicase conserved C-terminal domain 758 852 IPR001650 -
Psa7g5355 1404 Pfam Helicase associated domain (HA2) 915 1045 IPR007502 GO:0004386
Psa7g5355 1404 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 723 894 IPR001650 -
Psa7g5355 1404 SMART AAA_5 365 527 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5355 Psa-Chr7 463601622 463608559 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5355 K14780 - gmx:100788201 1886.31