Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5065 ATGAATAGGCCGAAAAGCGAGGGCATAACCTTCACGAAGGAACCTTACATCGAGGATACAGGACCACGCAAAATAGCGGGTATTTCATTTTCCACGCTATCTGATACAGAAATCATGAAAATTGGTGAAGTTCAAGTGTGGAAAGATGCTTACTATGATCCATTCAAAAAGCCTGTTCCTGGTGGCTTGTTGGATTCCCGCCTGGGCCCTGCTAATAAGAGTCTTTCCTGTGCAACATGCCACGGGCAATATGCTGACTGTCAAGGGCACTATGGATACTTACCACTTGTCCGACCTGTTTTCAATGTTGGATTCTTAAGTACAATTGTGAAAATACTGAAGTGCATTTGTAAGCGCTGTGCTTGTGTTTTCCTTGATGATGATGCCCGTAAAAAACATTTGGTGAAAATGAGAAACCCCAAATTGGATGGGCTGCAGAAGATGCAATTGCTTGAATCTATAATAAAAAAATATAAATCTGTTAAAGCCATAGCGTGCCCAAGATGTGGATATATCAATGGTTCAGTAAAGCACAATAAGTCTACCATGAGCATTGTTCATGACTGCAACAATGAAGTTGTTGCAGAGCTCCAATCAGCTCTTTCTGATATAAACAATAATAGGGCATGCAATGACTTGACTTCTCGAGTTCTTGACCCTCTCAGGGTCCATTACTTGTTTAAAGCGATGCTTGTTGAGGATTGCGACCTACTTTATATTGAAAAACCAGAGAAGCTGATAATAACAAACATTGCTGTGCCACCGATAGTTATTCGACCTTCAGTTATAATGGACGGGCAAAGCAATGAAAATGACATAACAGAGAAGCTAAAGAAAATAATCCAGGCAAATGCTAATTTGCAGCAAGAATCTGAAGAATCATCCAAATTTCAGGAGAATTGGCTTATGCTTCAATTCCATGTTGCTCAATACATAAATAGTGATGTTAAAGGTGGGCCAAACTTAAATCAAACGAGCAAGCCTTTAACCGGTTTTATTCAACGCATTAAAGGGAAGCAGGGGCGTTTCCGTAGCAATTTGTCTGGAAAACGTGCTGAATATACTGGTAGGACAGTTATTTCACCCGATCCTAATCTAAAGATTACCGAGGTTGCAATACCCATCCATATGGCTCGCATTTTGACTTATCCCGAACGTGTTACACATCACAACATAGAGAAGTTGAGACAATGTATGAGAAATGGTCCTGATAAGTATCCTGGTGCAAGGCTTCTTAAAAAAGCCGGTGGTACCTCATGGAATTTAAAACTTTCTTCTAGGAAGCGCCTTGCCGATGAGCTGAAATTTGGTGATATTGTTGATCGCCATTTAGAAGATGGAGACATTGTTCTTTTCAACAGACAGCCAAGCTTGCATCGGATGTCTATGATGTCTCATAGGGCAAGGATCATGCCATGGAGAACTTTGAGATTTAATGAATCAGTATGTAATCCATATAATGCGGATTTTGATGGCGATGAGATGAACCTACACGTTCCACAGACCGAGGAGGCTCGAACAGAGGCTCTTTTATTGATGACGGTGCAAAACAATTTGTGTACCCCAAAAAATGGGGAAATTCTGGTTGCCTCTACACAAGACTTCTTAACCTCTTCCTTTCTCATAACTAGGAAAGATACTTTTTATGACCGTTCAACATTTTCACTTATTTGTTCATACATGGGGGACGGCATGGATCTTATCGATTTGCCAACTCCTGCAATTATTAAGCCAGTTGAACTCTGGAGTGGTAAGCAGATATTTAGCATTTTATTGCGCCCACATGCGAATGTGAGGGTGTATGTGAACCTCACTGTAAAGGAGAAAACACACAGCTCAAAGCTAGATGACAGGAAAAGAGAAATGAAAACAATGTGCCCGAATGATGGATTTGTTTACTTTCGCAATAGTGAGTTAATCTCCGGGCAACTTGGAAAGGTGACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTGTTACTAAGAGACTATAAATCTGATGCTGCTGCTTCTTGCATGAATCGTCTTGCTAAATTAAGTGCTCGGTGGATAGGTAACCATGGGTTCTCCATAGGCATTGATGACGTGCAACCTAAAGTGATACTGATCCACCGGAAAAATGAAACGATTGACAAGGGTTATGATGACTGTGATCGTTTCATAGAAGATTTCGATAAAGGAAAGCTAAAACTAGCAGCTGGTTGTGATGCTGCTCAAACATTAGAGTCTAGTATATTTCGTACATTAAATAATTTACGTGAGGCAACAGGAAAGGTTTGCATGCAAACATTACACTGGAGAAATAGTCCATTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATCAACATCTGTCAAATGGTTGCCTGTGTTGGTCAACAGTCAGTTGGAGGTTGTCGTGCTGCTAATGGGTTCTTAGATCGGAGTCTTCCACATTTCCCTAAAAAAGCAAAAACCCCTGCTGCTAAAGGTTTTGTTCGTAATTCCTTCTACTCTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGAGAGAGGGGCTCGTTGATACAGCGGTCAAAACTGCAGACACTGGATATATGTCTCGTAGATTAATGAAAGCTCTAGAGGACTTATTTTTACATTATGATTACACTGTAAGAGATACCAATGGTAGTATTGTTCAGTTTTGTTATGGAGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGATCGCTTATTTCTCAGAAGCAAGGCCATATGTCCTCCTGAGGGAGATGTAATCTTATCTTCTTCAGATGTGAGTAAACTACTTCAAGAGAAGCTTTCTGAAGTTGGTATGTCTAATTTAGTGGAGAAGGATGCTTCAGAAAATGATATAATGTCAGAGGTGGGCTTCTCGGCGGATTTCATTAAATCTCTACAATCCTTTGTTGAAAAAAATACAAAATTAACAGAAACTATCACCGAGGGCGATTCTACAAATCTAAAGAACCTGAGTAACTTTATTCCGAAAATATCTGGGATCAGTCGCAGACAACTAGAGGTTTTTCTAGATATTTGTCTATCACGTTATCGTTTCAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGGGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGCATCATAGAAATAATAAACGGAGCACCAAATATTAAAACACCGATCATCACTGCAATACTTGAGAGGGATGATAATGCAAATATTGCAAGGGTGGTGAAAGGTCGCATAGAAAAAACAAATTTAGGCCAGGTTGCAAAGAATATTCAAGTTGTTTACACTTCAAGATCAGCGGCAATTTTAATCTCGCTGGACATGAAAATAATCGAAGATGCACATCTGAATATAGATGCTAATACTGTAAAACAATCAATTTTGCGATCTGGAAATCTGAAGTTGAAGTCAGAGAATATTAAGGTTTTGGATATGAAAAAGCTTCAAGTGGATGCCCGTGTTGCTAACCGAAGTGAAATCCTTTTTCAACTTAACAATCTAAAAAATTTGCTTCCATCAGTTGTAGTGAAGGGAGTTAAAACTGTCGAAAGAGCTGTCCTAGAAATAAAAAAAGATGAAAAAGCTGAGACTTACAATTTGCTGGTGGAAGGCAAGGGCCTTAAAGAGGTTATGGGAATTGAAGGGGTTAATGGACATAGAACGGTCAGTAATCATATCATTGAAATGATGAACATTCTGGGAATTGAAGCTGCCAGATATTGCATCATTGAACAGATACAGTATACGATGAAAAATCATGGAATGAGTATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGGTCAAGTCCTCGGAATGACAAGACACGGAATTCAGAAGATGGGCAGAAGTGCACTGATGCTTGCATCATTTGAGAGTTCAACGGACTATCTTTTCGACGCAGCCTTACGTGGGAAGGGTGACCCAATTGATGGAGTGAGTGATTGCATAATCATGGGTAAACCGATTCATATAGGCACCGGAATGATCGAGGTCCAACAAAGGTTGGAACCTCCTGTGTTGCGTCGGGGAGCTGTTCCTATTCTATCTGGAGTTTGA 4179 0.4018 MNRPKSEGITFTKEPYIEDTGPRKIAGISFSTLSDTEIMKIGEVQVWKDAYYDPFKKPVPGGLLDSRLGPANKSLSCATCHGQYADCQGHYGYLPLVRPVFNVGFLSTIVKILKCICKRCACVFLDDDARKKHLVKMRNPKLDGLQKMQLLESIIKKYKSVKAIACPRCGYINGSVKHNKSTMSIVHDCNNEVVAELQSALSDINNNRACNDLTSRVLDPLRVHYLFKAMLVEDCDLLYIEKPEKLIITNIAVPPIVIRPSVIMDGQSNENDITEKLKKIIQANANLQQESEESSKFQENWLMLQFHVAQYINSDVKGGPNLNQTSKPLTGFIQRIKGKQGRFRSNLSGKRAEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCMRNGPDKYPGARLLKKAGGTSWNLKLSSRKRLADELKFGDIVDRHLEDGDIVLFNRQPSLHRMSMMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDLIDLPTPAIIKPVELWSGKQIFSILLRPHANVRVYVNLTVKEKTHSSKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKSDAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKVILIHRKNETIDKGYDDCDRFIEDFDKGKLKLAAGCDAAQTLESSIFRTLNNLREATGKVCMQTLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRAANGFLDRSLPHFPKKAKTPAAKGFVRNSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGSIVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPPEGDVILSSSDVSKLLQEKLSEVGMSNLVEKDASENDIMSEVGFSADFIKSLQSFVEKNTKLTETITEGDSTNLKNLSNFIPKISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGAPNIKTPIITAILERDDNANIARVVKGRIEKTNLGQVAKNIQVVYTSRSAAILISLDMKIIEDAHLNIDANTVKQSILRSGNLKLKSENIKVLDMKKLQVDARVANRSEILFQLNNLKNLLPSVVVKGVKTVERAVLEIKKDEKAETYNLLVEGKGLKEVMGIEGVNGHRTVSNHIIEMMNILGIEAARYCIIEQIQYTMKNHGMSIDVRHIMLLADMMTVRGQVLGMTRHGIQKMGRSALMLASFESSTDYLFDAALRGKGDPIDGVSDCIIMGKPIHIGTGMIEVQQRLEPPVLRRGAVPILSGV* 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5065 1392 Gene3D RNA polymerase ii 382 442 - -
Psa7g5065 1392 CDD RNAP_III_Rpc1_C 1030 1370 IPR035698 -
Psa7g5065 1392 Coils Coil 270 300 - -
Psa7g5065 1392 Pfam RNA polymerase Rpb1, domain 5 835 1323 IPR007081 GO:0003677|GO:0003899|GO:0006351
Psa7g5065 1392 Gene3D - 698 814 IPR038120 -
Psa7g5065 1392 SMART rpolaneu7 244 543 IPR006592 GO:0003677|GO:0003899|GO:0006351
Psa7g5065 1392 Gene3D - 340 522 - -
Psa7g5065 1392 Pfam RNA polymerase Rpb1, domain 4 723 828 IPR007083 GO:0003677|GO:0003899|GO:0006351
Psa7g5065 1392 Gene3D - 875 925 - -
Psa7g5065 1392 Pfam RNA polymerase Rpb1, domain 3 518 697 IPR007066 GO:0003677|GO:0003899|GO:0006351
Psa7g5065 1392 Gene3D - 1325 1370 - -
Psa7g5065 1392 CDD RNAP_III_RPC1_N 33 885 IPR035697 -
Psa7g5065 1392 Gene3D RNA polymerase II, clamp domain 15 138 IPR044893 -
Psa7g5065 1392 Pfam RNA polymerase Rpb1, domain 1 23 347 IPR007080 GO:0003677|GO:0003899|GO:0006351
Psa7g5065 1392 Gene3D RNA polymerase Rpb1, domain 3 523 697 IPR042102 -
Psa7g5065 1392 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1375 - -
Psa7g5065 1392 Pfam RNA polymerase Rpb1, domain 2 349 515 IPR000722 GO:0003677|GO:0003899|GO:0006351
Psa7g5065 1392 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1375 IPR045867 GO:0003899|GO:0006351
Psa7g5065 1392 Gene3D - 815 873 - -
Psa7g5065 1392 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5065 Psa-Chr7 444973035 444997618 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5065 K03018 - gmx:100811292 2022.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5065 7 444973035 444997618 Psa7g5065 7 444973035 444997618 ECH