Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5001 ATGGCACCAAAAGGAGAGAAGAAGCCAGCGGAGAAGAAACCCGTGGAGGAGAAGAAGTCCACCATAGCAGAGAAGGCTCCTGCCGAGAAGAAGCCAAAGGCCGGAAAGAAGCTGCCTAAGGACGGTGGTGCCGCCGCCGGAGACAAGAAGAAGAAGAGAAACAAGAAGAGCGTGGAGACATACAAGATCTACATCTTCAAAGTTCTGAAACAAGTTCACCCTGACATTGGTATCTCAAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGACATTTTCGAGAAGCTTGCTGCTGAGTCTTCAAGACTTGCAAGGTACAACAAGAAGCCAACAATCACTTCAAGGGAAATTCAGACCGCGGTCAGGCTTGTTCTGCCCGGAGAATTGGCCAAGCATGCCGTCTCTGAGGGTACCAAGGCTGTGACTAAGTTCACAAGCTCTTAA 447 0.4944 MAPKGEKKPAEKKPVEEKKSTIAEKAPAEKKPKAGKKLPKDGGAAAGDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAAESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5001 148 MobiDBLite consensus disorder prediction 1 56 - -
Psa7g5001 148 PANTHER HISTONE H2B.1-RELATED 5 148 - -
Psa7g5001 148 PANTHER HISTONE H2B 5 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Psa7g5001 148 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Psa7g5001 148 SUPERFAMILY Histone-fold 32 148 IPR009072 GO:0046982
Psa7g5001 148 Pfam Core histone H2A/H2B/H3/H4 4 124 IPR007125 GO:0003677
Psa7g5001 148 Gene3D Histone, subunit A 18 148 IPR009072 GO:0046982
Psa7g5001 148 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Psa7g5001 148 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Psa7g5001 148 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Psa7g5001 148 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Psa7g5001 148 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Psa7g5001 148 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5001 Psa-Chr7 440042572 440043592 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5001 K11252 - gmx:100817849 202.986