Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4962 ATGGGTCAAGGTCTTAGTTGCAGAGGGAGTCATGAACATGGACTCTTTCGTGCTGTCCAACATGGTCATCTTCAAACTGTTGTTGCTCTGTTACAGACACACCCTTCTCTTATTCATCGTACTACTGTTTATGACCACCATTCCCCTCTTCATATTGCTGCTGCTAATGGTCAGATCCAGGTTTTATCTAGGCTTTTGGATGGATCTGCAAATCCAGATGTGTTGAATCGACAGAAGCAGTTCTTTTCTGTTTCCGGATTGAGTTTGATTATAATTGATTCATTTGAAATGCTAAAGAGAAATAAGAGTTTGATTGATTGTTGTAGGGGGTTTTCGCGGTTTGTGAATATTAGAGACGGTAGGGGCGCTACACCGTTGCATTTAGCGGCTCGTCAAAGACGGTCTGAATGTGTGCATACTTTGTTGTGTAGTGGAGCTCTTGTTTCTGCTTCAACTAGCAGATATGGATGTCCCGGGAGCACTCCTCTTCATCTTGCAGCAAAAGGAGGATCTCTGGATTGCATCCGCGAACTATTAGCATGGGGTGCAGACCGTCTTCAACGCGATGCATCTGGGCGTATACCATATGTGGTTGCTCTGAAGCACAAACACGGAGCATGTGCAGCATTGCTAAATCTTTCATCCGCACAGCCTCTTGTCTGGCCGTCGTCATTGAAAATTATCAGCGAGCTTAATCCGGAGGCTAAAACTTTACTAGAGCAGGCTTTGATGGACGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGAAGTCCTCACTCTCTTCCGTCTCCATCACACCCTCATCTGATCGACGACAACATCTCTGAGGTTAGCGAGACGGAACTATGCTGCATCTGCTTTGAGCAAGTGTGTACGATTGAAGTCCAAGACTGTGGCCACCAAATGTGTGCACAATGCACACTAACACTCTGTTGTCACAACAGGCCGAACACATCGACTTCTCAACCAACCCCACCCGTTTGTCCATTCTGTCGAAGCGCCATATCTAAACTGACGGTTATCAAGATAGAAACTCAGGAAGACATCGATCAAGACGGTACACCTGATACCACTTATTTCAAGCCAAGCAAGTCACGGAAATATCGAAACATGAACGAAGGCTGCAGCAGCAGTTTCAAGGGAATGTCCAATGTAAACTCATACGGAAAAATGAACGGCCGTAGCTCCGGTATGATTGCTTCCGAAAACGAGTGGATTGATGATAAGCCACAATGA 1239 0.4544 MGQGLSCRGSHEHGLFRAVQHGHLQTVVALLQTHPSLIHRTTVYDHHSPLHIAAANGQIQVLSRLLDGSANPDVLNRQKQFFSVSGLSLIIIDSFEMLKRNKSLIDCCRGFSRFVNIRDGRGATPLHLAARQRRSECVHTLLCSGALVSASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNLSSAQPLVWPSSLKIISELNPEAKTLLEQALMDANREREKNILKGSPHSLPSPSHPHLIDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLTLCCHNRPNTSTSQPTPPVCPFCRSAISKLTVIKIETQEDIDQDGTPDTTYFKPSKSRKYRNMNEGCSSSFKGMSNVNSYGKMNGRSSGMIASENEWIDDKPQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4962 412 Pfam Ankyrin repeats (many copies) 15 66 IPR002110 GO:0005515
Psa7g4962 412 ProSiteProfiles Ankyrin repeat region circular profile. 121 146 - -
Psa7g4962 412 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Psa7g4962 412 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Psa7g4962 412 Gene3D - 162 216 IPR036770 -
Psa7g4962 412 Gene3D - 98 161 IPR036770 -
Psa7g4962 412 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Psa7g4962 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 352 IPR013083 -
Psa7g4962 412 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Psa7g4962 412 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 103 409 - -
Psa7g4962 412 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 80 - -
Psa7g4962 412 PANTHER HOMEOBOX PROTEIN WARIAI 1 80 - -
Psa7g4962 412 PANTHER HOMEOBOX PROTEIN WARIAI 103 409 - -
Psa7g4962 412 Pfam Ankyrin repeats (many copies) 159 196 IPR002110 GO:0005515
Psa7g4962 412 SUPERFAMILY RING/U-box 283 339 - -
Psa7g4962 412 Gene3D - 7 85 IPR036770 -
Psa7g4962 412 ProSiteProfiles Zinc finger RING-type profile. 284 333 IPR001841 -
Psa7g4962 412 SMART ANK_2a 45 74 IPR002110 GO:0005515
Psa7g4962 412 SMART ANK_2a 10 40 IPR002110 GO:0005515
Psa7g4962 412 SMART ANK_2a 158 187 IPR002110 GO:0005515
Psa7g4962 412 SMART ANK_2a 121 150 IPR002110 GO:0005515
Psa7g4962 412 SUPERFAMILY Ankyrin repeat 15 211 IPR036770 -
Psa7g4962 412 ProSiteProfiles Ankyrin repeat region circular profile. 158 184 - -
Psa7g4962 412 Coils Coil 410 412 - -
Psa7g4962 412 Pfam Ankyrin repeat 122 150 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4962 Psa-Chr7 435545104 435547372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4962 12 211 Miscellaneous Gene Families AT3G12360 29.902 9.32e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4962 - - gmx:100800611 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4962 7 435545104 435547372 Psa7g4962 7 435545104 435547372 ECH