Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4824 ATGTTGTCTGAGTTGGAAAGAAGACCAGTTCTTGGTAATAACGACGGGTATTACGGTGATGAATTGGAGAAAGAAATAGGGATGTTGCTTCGCGAGCAACGGCGGCAAGAAGGTGATGATCGTGATGATCGCGTTGATCGGGAACGAGAGCTTAATATATATAGGAGTGGATCAGCTCCACCTACTGTGGAAGGTTCTTTGAGTGCTGTTGGAGGATTGTTTAGTGGCGGTGGTGGTAGTAGTGGCAGTGGTGCAGCTGGGTTTTCTGATTTTCCTGGGACCAAAGATGTGAATGGAGTTGTTTCTGAGGAAGAGCTTAGGTCGGATCCGGCTTATCTTTCGTATTATTATTCCAATGTGAATTTGAATCCTAGACTTCCGCCTCCTTTGTTGTCAAAAGAGGATTGGAGGTTTCAACAAAGACTGAAAGGTGGAAACTCGGGTGTAGGTGGAATTGGAGATAGGAGGAAAGCTAGTATGACTGATGATAATGGTGGTAGGGCAATGTTTTCGACGCCGCCGGGTTTTAACTTTAGGAAGCAAGAAAGGAGTGAGGTGGATACTGAAAAACCAAGAGGCTCTGCTGAATGGGGTGGTGATGGTCTTATTGGTTTACCTGGCTTGGGACTTAGGAACAAACAAAAGAGTCTTGCAGAGATTTTTCAGGATGATATGGAGCATAACACGATGATCACAGGCCTTCCTTCTCGTCCAGCTAGTCGTAATGCATTTGATGAAAATGTTGATGTCTTAAATTCTTCTGAAGCAGAGTTGGCTCACGTTCAAGGTTCATCTGCAACACAAAATATTGGTCTGCCAACTTCATATTCTTATGCTGCTGCTCTAGGAGGATCTTCACTGTCAAGAAGCACTACTCCTGATCCACAACATGTTGCAAGGGCTCCTAGTCCATGCCTCACGCCTATTGGTGGAGGGAGAAGTGTTGCTTCTGACAAGAGAGGTATTATCAGTCCAGATGCATTTAACAGTGTTTCATCTGGCAAGAATGAGTCAGCAGATCTTGTGGCTGCATTGTCAGGGATGAACTTATCAGCAGGTGATGAAAACCATCTGCCATCACAGGTTGAATCAGACGCCGATAATCATCAGAGATACCTTTTTGGTATGCAGGGTGGTCAAGATCATGGCAAGCAACATGCATATCTAAAAAAATCTGAATCAGGGCATTTGCAGAGTTCGGTTCAGAGCAGGAGTGGATCAGATCTCAATAACCTATCTCTGCATCGGCAGGTTGAGCTTCAAAACTCCTCTGCTCCTTCAAATAACTCCTATTTCAAAGGTTCACCTACCTCCCATTTTAGCGGAGGAGGTAATTTGCCAGCTCAGTACCAGGGTATTGATGGTATGAATTCGTCATTTACTAACTATGGCGTAAGTGGTTATGCTGGAAATCCCGCCTTGACATCCTTGATGACTAACCAATATGGCACCGGTAATCTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCATCCCCAGGAATGGACTCGAGATTTCTCGGAGTTGGTTTGGCTTCTGGAGCTGGTTCTCCATCTGATGTGCATAGCCTTGGTCGGATGGGAAATCAAATTGCAGGGGGCGGTCTTCAGGCCCCGTTTGTTGATCCAATGTATCTTCAGTACATGAGGACATCTGAATATACTGCAGCACAACTTGCTGCTCTTAATGACCCCTCTGTGGACAGGAACTACTTGGGCAATTCATACATGAATATACTTGAGCTTCAGAAAGCTTATCTCGGGTCTGTCCTCTCACCTCAAAAGTCACAATACAATGTACCACTGGGTGGTAAATCAGCCAACTCCAATCACCATGGTTATTATGGAAATCCAGCATACGGGGTTGGAATGTCTTATCCAGGAAGTCCAATGGCAAACTCTGCTTCTCCAGTTGTGTCTGGAAGTTCCATCAGACACAACGATCTAAACATGCGTTTTGCTTCTGGAATGAGGAACTTAGCTGCGGTCATGGGACCTTGGCATGTAGATACTGGGAACATGGATGAAAGCTTTGCTTCTTCTCTGTTGGAAGAGTTCAAGAGCAATAAAGCCAAGTGTTTTGAGCTCTCTGAAATTGCTGGACATGTTGTTGAATTCAGTGCGGATCAATATGGAAGCCGATTTATTCAACAGAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCTCTTGTTTTGATGACTGATGTCTTTGGGAATTATGTGGTTCAGAAGTTTTTTGAGCATGGACTTGCACCCCAGAGAAGGGAATTAGCTAACAAGCTTCTTGGCCATGTCCTGACACTCAGCCTTCAAATGTATGGTTGTCGGGTCATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCAGAAGATGCAATTGACTTCATTGTTTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGTCGTGTGATACAAAGAGTACTGGAGCACTGCGAAGACACTACAACGCAGCAGAAAGTTATGGATGAGATTTTAAGTTCTGTCAGTATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTACTGGAACATGGGAAGCCTCATGAGCGTTCTACTATAATAAAGGAATTAGCAGGGAGGATAGTTCAAATGAGTCAACAAAAATTTGCCTCCAATGTTGTGGAGAAATGCTTGACCTTCAGTGGTCCTTCAGAACGCCAAATACTAGTCAGTGAGATGCTTGGAACCACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTGCAAATTATGTTGTCCAAAAAGTACTGGAAACATGTGACGACCATCAACGGGAGCTGATTCTTTCGCGAATCAAAGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGAGAGAGAAGAATTGCTGCTCAGACTCCTCAAGCTGCTTAG 3111 0.4391 MLSELERRPVLGNNDGYYGDELEKEIGMLLREQRRQEGDDRDDRVDRERELNIYRSGSAPPTVEGSLSAVGGLFSGGGGSSGSGAAGFSDFPGTKDVNGVVSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGNSGVGGIGDRRKASMTDDNGGRAMFSTPPGFNFRKQERSEVDTEKPRGSAEWGGDGLIGLPGLGLRNKQKSLAEIFQDDMEHNTMITGLPSRPASRNAFDENVDVLNSSEAELAHVQGSSATQNIGLPTSYSYAAALGGSSLSRSTTPDPQHVARAPSPCLTPIGGGRSVASDKRGIISPDAFNSVSSGKNESADLVAALSGMNLSAGDENHLPSQVESDADNHQRYLFGMQGGQDHGKQHAYLKKSESGHLQSSVQSRSGSDLNNLSLHRQVELQNSSAPSNNSYFKGSPTSHFSGGGNLPAQYQGIDGMNSSFTNYGVSGYAGNPALTSLMTNQYGTGNLPPLFENVAAASAMASPGMDSRFLGVGLASGAGSPSDVHSLGRMGNQIAGGGLQAPFVDPMYLQYMRTSEYTAAQLAALNDPSVDRNYLGNSYMNILELQKAYLGSVLSPQKSQYNVPLGGKSANSNHHGYYGNPAYGVGMSYPGSPMANSASPVVSGSSIRHNDLNMRFASGMRNLAAVMGPWHVDTGNMDESFASSLLEEFKSNKAKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALVLMTDVFGNYVVQKFFEHGLAPQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCEDTTTQQKVMDEILSSVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGRIVQMSQQKFASNVVEKCLTFSGPSERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQTPQAA* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4824 1036 MobiDBLite consensus disorder prediction 287 309 - -
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 954 995 IPR001313 GO:0003723
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 845 881 IPR001313 GO:0003723
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 701 736 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 809 844 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 960 995 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 737 772 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 845 881 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 918 953 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 882 917 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 773 808 IPR001313 GO:0003723
Psa7g4824 1036 SMART pum_5 701 736 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 820 843 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 968 997 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 849 884 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 887 919 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 741 774 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 705 739 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 922 956 IPR001313 GO:0003723
Psa7g4824 1036 Pfam Pumilio-family RNA binding repeat 777 810 IPR001313 GO:0003723
Psa7g4824 1036 PANTHER PUMILIO HOMOLOG 1-RELATED 42 1029 - -
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 882 917 IPR001313 GO:0003723
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 918 953 IPR001313 GO:0003723
Psa7g4824 1036 Gene3D - 681 1027 IPR011989 -
Psa7g4824 1036 CDD Pumilio 697 1017 IPR033712 GO:0003723
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 809 844 IPR001313 GO:0003723
Psa7g4824 1036 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 681 1021 IPR033133 GO:0003723
Psa7g4824 1036 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 42 1029 - -
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 737 772 IPR001313 GO:0003723
Psa7g4824 1036 SUPERFAMILY ARM repeat 684 1018 IPR016024 -
Psa7g4824 1036 Pfam Nucleic acid binding protein NABP 300 700 IPR012940 -
Psa7g4824 1036 ProSiteProfiles Pumilio RNA-binding repeat profile. 773 808 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4824 Psa-Chr7 419254511 419261226 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4824 K17943 - gmx:100803806 1660.58