Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4797 ATGATTTTCTCAAGGATTGGGCGCGCTCTGTCGCGTTCTTCTCGCGTTAAAAATTTGTTGCACGGTGATTCGAGATTGGGGGCGCTTTCTGGAGTTCCGCGAATAGATGTCTATTCTGAGGGTGTTGAAGGGGGGTTAGGGTTTTTCAGGGGTTACGTATCTTCTTCAGTAGCTCGCAATAATGGTTTTGTTTCTAATTTGTCTGGTTTTAAATCTGTTGCTGGAAACCCTAGGTTTCTTCGCTTGTTTTCCAGCGAAGCCCCAAAGAAGAAGAATTATGAAAACTTTTATCCCAAGGGACAGAAGGAAGTACCTAAGGGGAATGACAAAAAGAATGAGTCTAAAGAGGATTCCAAGTCAAACACAGAGGATCAAGGTGGTTTTCAAGAAGCCTTCATGAAGCAATTTCAAAGTTTTCTCACCCCATTGTTGGTGATGGGGCTATTTCTGTCATCCTTTTCTTTTGGTCCTCGTGAGCAGCAGCAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGGTTAGTAGACCATATTGTTGTCTCCAACAAATCAGTTGCCAAAATATATGTGAGAAACTCTCCCCGTGATCAAGCTGACAGCGAAGTACTACAAGGAAACCTTCCTGCAAAGGGGTCTAGTGGCCATTATAAATATTATTTCAATATTGGAAGTGTCGAGTCTTTTGAGGAGAAGTTAGAGGAAGTGCAAGAAACACTAGGTGTTGACCCTCACGATTATGTACCTGTTACATATTCTTCTGAACTGGTTTGGTACCAGGAGTTGATGAGGTTTGCTCCAACCCTGTTACTTTTGGGAACTCTCTTGTATATGGGAAGGAGAATGCAAGGTGGATTTGGTGTTGGCGGCGGCGGCGGTGGTAAGGGTGCTCGTGGAATATTTAACATTGGAAAAGCACATGTTACTAAAGTAGACAAAAATGCCAAAAACAAGGTCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAACAAGAAATTATGGAGTTTGTGCACTTCCTCAAGAATCCTAAGAAGTACGAAGAGCTTGGTGCCAAAATTCCAAAAGGTGCTCTTCTGGTCGGTCCCCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCCGATTTCATGGAAATGTTTGTCGGTGTTGGACCGTCAAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGGAAAAGGGGCCGTGGAGGTTTCTCTGGTTCAAATGATGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGAGTTGTTGTGCTAGCAGGTACAAATAGACCCGATATATTAGACAATGCCCTACTTAGGCCTGGGCGTTTTGACCGCCAGATAACAATTGATGTACCCGACATTAAAGGCCGTGACCAGATTTTTCAGATTTACTTGAAAACGATCAAACTTGACCACGAGCCCTCATATTATTCTCAAAGGCTTGCAGCCCTTACTCCAGGTTTTGCTGGAGCAGACATTGCTAATGTTTGCAATGAAGCTGCACTGATTGCTGCAAGAACTGATGAAGCACAAGTCACAATGGATCATTTCGAGGCAGCTATTGATAGAATCATTGGTGGTTTGGAGAAGAAGAACAAGGTAATAAGTAAGCTGGAAAGGCGTACTGTTGCTTACCATGAAGCAGGTCATGCTGTTACAGGTTGGTTCTTGGAACATACTGATCCATTGTTGAAAGTAACTATTGTTCCTCGCGGAACAGCAGCTCTTGGGTTTGCACAGTATGTTCCTAATGAGAATCTCCTCAAGACTAAGGAGCAGCTTTTCGATATGACTTGTATGACCCTTGGTGGCCGGGCTGCCGAGAAGGTTCTCATTGGGACAATCTCTACCGGAGCACAAAATGATTTAGAGAAAGTGACCAAGATGACTTATGCCCAAGTAGCCGTCTATGGTTTCAGCGAAAAAGTGGGCCTCCTCTCTTTCCCTCAAAGAGAGGACTCAATGGAGATGACCAAACCATACAGCAGCAAAACTGGTGCAATAATTGATACTGAAGTCCGAGAATGGGTGAACAAAGCATATGAACGTACCATACAGCTTATAGAGGAACACAAGGCGAAAGTAGCCGAAATTGCAGAGTTGTTGCTTGAAAAAGAAGTACTTCACCAAGAAGACTTGCTTCGAGTCTTGGGTGAGCGGCCCTTCCAAAGTGCTGAGCCCACTCATTATGATACATTTAAGCTAGGGTTTCAAGATGAGGAGAAAGTTGTTGAAACCACAGTAAATGAAGCCAAGGATGATGGTGGGTCTTCACCTCTAGAGCCAGAGGTTGTTCCCACATAG 2433 0.4369 MIFSRIGRALSRSSRVKNLLHGDSRLGALSGVPRIDVYSEGVEGGLGFFRGYVSSSVARNNGFVSNLSGFKSVAGNPRFLRLFSSEAPKKKNYENFYPKGQKEVPKGNDKKNESKEDSKSNTEDQGGFQEAFMKQFQSFLTPLLVMGLFLSSFSFGPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRNSPRDQADSEVLQGNLPAKGSSGHYKYYFNIGSVESFEEKLEEVQETLGVDPHDYVPVTYSSELVWYQELMRFAPTLLLLGTLLYMGRRMQGGFGVGGGGGGKGARGIFNIGKAHVTKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDNALLRPGRFDRQITIDVPDIKGRDQIFQIYLKTIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTDEAQVTMDHFEAAIDRIIGGLEKKNKVISKLERRTVAYHEAGHAVTGWFLEHTDPLLKVTIVPRGTAALGFAQYVPNENLLKTKEQLFDMTCMTLGGRAAEKVLIGTISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDSMEMTKPYSSKTGAIIDTEVREWVNKAYERTIQLIEEHKAKVAEIAELLLEKEVLHQEDLLRVLGERPFQSAEPTHYDTFKLGFQDEEKVVETTVNEAKDDGGSSPLEPEVVPT* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4797 810 Pfam AAA+ lid domain 523 562 IPR041569 -
Psa7g4797 810 PANTHER ATP-DEPENDENT PROTEASE 32 809 - -
Psa7g4797 810 Pfam ATPase family associated with various cellular activities (AAA) 361 493 IPR003959 GO:0005524|GO:0016887
Psa7g4797 810 Gene3D Peptidase M41 579 775 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa7g4797 810 ProSitePatterns AAA-protein family signature. 464 482 IPR003960 GO:0005524|GO:0016887
Psa7g4797 810 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 32 809 - -
Psa7g4797 810 MobiDBLite consensus disorder prediction 94 124 - -
Psa7g4797 810 Gene3D - 146 258 - -
Psa7g4797 810 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 260 760 IPR005936 GO:0004176|GO:0004222|GO:0016020
Psa7g4797 810 MobiDBLite consensus disorder prediction 790 810 - -
Psa7g4797 810 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 12 784 IPR005936 GO:0004176|GO:0004222|GO:0016020
Psa7g4797 810 Pfam Peptidase family M41 577 758 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa7g4797 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 567 IPR027417 -
Psa7g4797 810 CDD AAA 357 493 - -
Psa7g4797 810 SUPERFAMILY FtsH protease domain-like 577 767 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa7g4797 810 SMART AAA_5 356 496 IPR003593 -
Psa7g4797 810 Gene3D - 304 493 IPR027417 -
Psa7g4797 810 Gene3D - 495 578 - -
Psa7g4797 810 Pfam FtsH Extracellular 140 247 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Psa7g4797 810 MobiDBLite consensus disorder prediction 94 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4797 Psa-Chr7 416200064 416205720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4797 1 810 Miscellaneous Gene Families AT2G29080 75.183 0.0 1173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4797 K08956 - gmx:100806656 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4797 7 416200064 416205720 Psa7g4797 7 416200064 416205720 ECH