Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4721 ATGATGATTCAAGTTGAAATAGCCAAACACCTACACAAACCTCTAAATCTCAAACTAAAACTCTTAACCTTCTTCTTCTCATCTTCTTCTTCTTCCTCTTCACAACAACAACAACAACAAATTTCTGTAACTTCCGCAGTTTCAATCCTCACCAACCAACGTTCCAAATCCCGCTGGAACACTCTCCATTCCCTCTACCCAACCGGATTCAACCCAATCGATTTCTCCCAAATCACTCTCCACCTCCACAACAAACCCCACCTTGCACTTCACTTCTACCAATGGACCAAATCCAAATCCCTCTGTCACCACAACCTTTCCTCCTACTCCACCATCATCCATATCCTCGCACGTGCCCGTCTCTACTCACACGCTTACAACACCATCAGAACCGCACTTCTCAATTCCGAAACCCACTCCACTTCCACGCCGTTGAAGCTTTTCGAGATTCTCGTTAATTCTTATCGAGATTGTGGATCTTCTCCTTTTGTTTTTGATTTATTGATTAAAGCATGTTTACAGTCTAGAAAAATTGAATCTTCGATTGAAATTGTTAGAATGTTACTCTCCCGTCGGATTAGCCCCAATGTTATGACTTTGAATTCTTTGATTTCTAGGGTTTGTTCAAAATTTGGGGTGGATTTAGGGTATGAGATTTACCGGGAGTTTTTTAGGTTGGATGAAGAAAAATATGATTTTTCCAAAAGGGGTTTTAGAGTTGTTAACCCTAATGTGCATACTTTTAATACATTGATGTTGTGTTGTTATCAAAATGGTTTGATGGAGAAGGTTGAGGAAATTTGGGGTGAAATGAGTGAAAGGAAGTGTGATCCTAATGGTTATAGCTATAGTTTATTGATGAGTGCATTTTGTGAGGGAGGGAGGATGGGAGATTGTGAAGAGATGTGGAAGGAAATGAGGAAGAAGGAAATTGAGCCTGATGTGGTTAGTTACAACACTATAATTGGTGGGTTTTGTAAGATTGGTGATGTTGGAAAAGCTGAGGAGTTTTTCAGAGAAATGGGATTGGTTGGTATTGATGCAACTGGTTCAACTTATGAGCATCTTGTTAAGGGGTTGCTTTGTGATAGAGGTAGGGTTGATGAAGCTATGGAGTTTTTCAGGAGTGGAGTTGTGAAGTTTGATTTGGTTCCAAAAGAGAAGAGTTATGAGGCCTTGATTAAAGGGTTGTGTTTTGAGGGTAAGATGGAAGAAGGGTTGAAGCTTCAGGCAGAGATGGTAGGAAAAGGGTTTGAACCGAATTCGGATATATATGAAGCTTTTATTGACGGGTATATTAGACAAGGGAATGAGGAAATAGCAGAAGCTTTGAGGAGAGAAATGGTGCAAACTCGTGCAGAGATAACTGATTAA 1374 0.4017 MMIQVEIAKHLHKPLNLKLKLLTFFFSSSSSSSSQQQQQQISVTSAVSILTNQRSKSRWNTLHSLYPTGFNPIDFSQITLHLHNKPHLALHFYQWTKSKSLCHHNLSSYSTIIHILARARLYSHAYNTIRTALLNSETHSTSTPLKLFEILVNSYRDCGSSPFVFDLLIKACLQSRKIESSIEIVRMLLSRRISPNVMTLNSLISRVCSKFGVDLGYEIYREFFRLDEEKYDFSKRGFRVVNPNVHTFNTLMLCCYQNGLMEKVEEIWGEMSERKCDPNGYSYSLLMSAFCEGGRMGDCEEMWKEMRKKEIEPDVVSYNTIIGGFCKIGDVGKAEEFFREMGLVGIDATGSTYEHLVKGLLCDRGRVDEAMEFFRSGVVKFDLVPKEKSYEALIKGLCFEGKMEEGLKLQAEMVGKGFEPNSDIYEAFIDGYIRQGNEEIAEALRREMVQTRAEITD* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4721 457 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 360 452 - -
Psa7g4721 457 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 4 359 - -
Psa7g4721 457 Gene3D Tetratricopeptide repeat domain 231 376 IPR011990 GO:0005515
Psa7g4721 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Psa7g4721 457 Pfam PPR repeat family 243 291 IPR002885 -
Psa7g4721 457 Gene3D Tetratricopeptide repeat domain 77 228 IPR011990 GO:0005515
Psa7g4721 457 Gene3D Tetratricopeptide repeat domain 377 453 IPR011990 GO:0005515
Psa7g4721 457 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 4 359 - -
Psa7g4721 457 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 360 452 - -
Psa7g4721 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Psa7g4721 457 Pfam PPR repeat 309 341 IPR002885 -
Psa7g4721 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Psa7g4721 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Psa7g4721 457 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Psa7g4721 457 TIGRFAM PPR: pentatricopeptide repeat domain 316 341 IPR002885 -
Psa7g4721 457 TIGRFAM PPR: pentatricopeptide repeat domain 246 279 IPR002885 -
Psa7g4721 457 TIGRFAM PPR: pentatricopeptide repeat domain 281 315 IPR002885 -
Psa7g4721 457 Pfam PPR repeat 389 418 IPR002885 -
Psa7g4721 457 Pfam PPR repeat 425 449 IPR002885 -
Psa7g4721 457 Coils Coil 441 457 - -
Psa7g4721 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4721 Psa-Chr7 409725211 409726686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4721 165 457 Glycosyltransferase AT1G05670 26.599 3.21e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4721 - - mtr:MTR_0026s0200 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4721 7 409725211 409726686 Psa7g4721 7 409725211 409726686 ECH