Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4628 ATGGATGGTTATGAAGCTACTAGGACAGTGTTTTCAAGGATCCAAAAAATGGACCCTGAAAATGCATCTAAAATCATGGGTGTACTTCTCATTCAAGACCATGGCGAGAAGGAAATGATAAGGTTAGCATTTGGTCCTGAATCACTTATTCACTCTCTCATTTTCAAAGCTAGAAAAGAGTTAGGACTACCTTGTAGTAATAACTCTCCACCAACACCTTCCACCCCTCTATCACCATCACCTTTCCTCTCAAGGCAAAACTCATCTTCTTCAAGGCTTACTAATGGTTTCAACCTTCCTCCTTCTCTAACCATCCCAAACCCTTCTTCTTCTTCCTCTTCAGCTTCTTGGGCTACCATGTCTGACTTCCATAACCATGATGATTCAATGATGAGCCCCAACAATATGCCTTTAGCCTCTTCTGCTACTTCACCTTTCTATCCAATTGATGATTTCCAACTCCAAGACCAACTTTCTTTCTTGAATGATGCTTCTGATTCTAGTACTCTCTTTCCTTCCTATGGTTGGGGAGGTAATTCTCTTCACAGGAGGAGTTGTTCTGTCAATGATGCTTGTTTAGGTTCTGAGGATCCAAATTCTGGTTTAGGGTGGAAGCCTTGTCTTTATTATGCTAGAGGGTACTGTAAAAATGGTACTAGTTGTAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGCAATTATTGGGTCACCTAACAAAGTTGAGATGATGGATCACTGTCATGAACTCTTGAGATCTAAATCTAGTCATCCACAAAGATTGGCTACTGCTGCTGCTGCTGCTTCTCACCTCATGGCCTCTAACTCTTTTCCATACTCACCAAAGTGCATGAATTTCCTTTTACAGCAGCAACAAAATGATACTCAAAGAGCAGCAGCTGCAGCTCTAATGATGAGTGAGGAGTTGCAAAAATTTGGAAGATCAAGGCTTGAAAGAAATGATTTTTCTTTGAATAGTCCTACTGGAATGATTAACCCAGCTTCAAGACAAATCTACTTGACTTTCCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCCAATTACTTCAGTATTTATGGTCCTGTTCAAGACGTGAGGATCCCATATCAGCAGAAGCGTATGTTTGGGTTTGTTACCTTTGTTTATCCAGAGACAGTGAAGCTCATTTTATCTAAAGGAAACCCTCATTTCGTTTGTGATGCTCGTGTACTCGTTAAGCCTTACAAGGAGAAGGGAAAAATTCCAGACAAGAAGCAGATTCAGCAGCAGGTAGATAGAGATTTTGATTTTTCACCATGTGGAACTCCTACTGGACTTGATGCTAGAGACGAATATGATCTTCAACTTGGTGGAAGATTGTTTTATAATACTCATGACATGTTGTGGAGGAGGAAGCTAGAGGAACAAGCTGATCTACAGCAAGCAGCTCTTGAGCTACAAAGTAGAAGGTTAATGGGTTTGCAACTTCTTGATATTAAGAAGCAACACCAACGTGCACTTTCTACTGGAAGTCCAATTCCTTCTCCTACTCAATCTCCTAACATGTTCAATCGAACTCTTGTTCTTCCTCCTTCTTTTCGCAGAAGCTCAGATTCCTCAGAGGAGAATGGTTCAAGTTTTGCTCCAGCTACTAGTACTGCTTCAGAAATTTCTGGTCAACATTCAGTCAATGGCTATGTGGTCAATAGTGAAGGCAATGGAAATGGAAAGCAAAGTTCAAGTCAGGATGAGGAGATTGATTTGCAAGAAAGTTTGGAGCACAACCTTCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGCTGGAGTAGACTTAGTGCCTCCTTTCTCTAATGGACCTTATGAGGCTATTGATTCAGATCCATCTGCTAACTCTAAATTTGGCACTAGTAGTAAATTACTTTCTACATCAGCATCGCCTCTTGATAGTATGACCTCTTTTAAATCCTATAATAACTGCCAATTACCAAGGTTCTCTTCCGGCCATGGAACTATTGGAATGTTTGCCGGCACCGGCGGTCCGATTGGCATTTAG 2037 0.4124 MDGYEATRTVFSRIQKMDPENASKIMGVLLIQDHGEKEMIRLAFGPESLIHSLIFKARKELGLPCSNNSPPTPSTPLSPSPFLSRQNSSSSRLTNGFNLPPSLTIPNPSSSSSSASWATMSDFHNHDDSMMSPNNMPLASSATSPFYPIDDFQLQDQLSFLNDASDSSTLFPSYGWGGNSLHRRSCSVNDACLGSEDPNSGLGWKPCLYYARGYCKNGTSCRFLHGGLGDADAIIGSPNKVEMMDHCHELLRSKSSHPQRLATAAAAASHLMASNSFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEELQKFGRSRLERNDFSLNSPTGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKIPDKKQIQQQVDRDFDFSPCGTPTGLDARDEYDLQLGGRLFYNTHDMLWRRKLEEQADLQQAALELQSRRLMGLQLLDIKKQHQRALSTGSPIPSPTQSPNMFNRTLVLPPSFRRSSDSSEENGSSFAPATSTASEISGQHSVNGYVVNSEGNGNGKQSSSQDEEIDLQESLEHNLPDSPFASPTKAAGVDLVPPFSNGPYEAIDSDPSANSKFGTSSKLLSTSASPLDSMTSFKSYNNCQLPRFSSGHGTIGMFAGTGGPIGI* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4628 678 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 666 - -
Psa7g4628 678 CDD RRM_AtC3H46_like 338 407 IPR034365 -
Psa7g4628 678 SUPERFAMILY RNA-binding domain, RBD 348 419 IPR035979 GO:0003676
Psa7g4628 678 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 393 IPR000504 GO:0003723
Psa7g4628 678 SMART c3hfinal6 203 227 IPR000571 GO:0046872
Psa7g4628 678 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 226 IPR000571 GO:0046872
Psa7g4628 678 Gene3D - 195 287 - -
Psa7g4628 678 ProSiteProfiles Zinc finger C3H1-type profile. 201 228 IPR000571 GO:0046872
Psa7g4628 678 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 666 - -
Psa7g4628 678 SMART rrm1_1 337 407 IPR000504 GO:0003723
Psa7g4628 678 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 412 IPR000504 GO:0003723
Psa7g4628 678 Coils Coil 464 484 - -
Psa7g4628 678 MobiDBLite consensus disorder prediction 68 91 - -
Psa7g4628 678 MobiDBLite consensus disorder prediction 528 552 - -
Psa7g4628 678 Gene3D - 288 425 IPR012677 -
Psa7g4628 678 SUPERFAMILY CCCH zinc finger 204 226 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4628 Psa-Chr7 395872817 395877783 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4628 - - gmx:100801341 927.546