Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4541 ATGAGACTATGTGATATCATCTCAGGTTATAAATACAGCAACATCAACCACAAAATTTGCAAGCAGCAGCATCCCAAAAAGAATTCAAGCAGCAAGATGGCCACTTTTGATAAAAACTTACTTCTAAATTATGTTCCAGTTTATGTAATGCTCCCACTCGGAGTTGTTAGTGTTGATAATGTCTTGGAAGATCCGGAGGGTATTAAAGAAAAGCTGGTGAAGCTACGAGCAGCGGGCGTGGATGGTGTTATGGTTGATGTCTGGTGGGGAATCATTGAAAAAAATGGACCTAAGCAGTATGATTGGAGTGCTTACAGAAGCTTGTTTCAGCTCGTTCAAGAAAGTGGTCTGAAACTGCAAGCAATCATGTCATTTCATCAATGTGGAGGGAATGTAGGGGATGTTGTAACCATCCCAATTCCACAATGGGTACTTGACATTGGACAATCAGATCCTGATATTTTCTACACCAACCGTTCCGGTACTAGGGACAATGAGTATCTGACTAATGGTGTAGATAACAAGCCTATCTTTCATGGAAGAACAGCCATTGAGGTATATAGTGATTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTTTTAAAATCAGAGGTTATTATAGACATTGAAGTTGGCCTTGGTCCAGCAGGAGAACTCAGATACCCATCCTATCCTCAAAATCAAGGATGGGTATTTCCTGGAATCGGAGAATTTCAGTGTTATGACAAATATTTGAAGGAAGATTTCAAATCGGCTGCAGCGAGTGCTGGCCATTCTGAATGGGAACTACCAGATGACGCTGGCACGTACAATGATGTACCAGAATCTACTGAATTCTTCAAAACAAATGGCACATACCTCACTGAGAAAGGGAAATTCTTCTTAACTTGGTACTCTAACCGATTGCTGAATCATGGTGATCAAATCCTAGATGAAGCTAACAAAGCTTTCTTGGGCTGTAAAGTCAAATTAGCAATCAAAGTTTCTGGAATCCACTGGTGGTACAGAGCTCCGAATCATGCTGCTGAACTCACTGCTGGATATTACAACCTTGATGATCGAGATGGATACTGTCCCATTGCTAAAACTGTGTCCCGTCATCACGGCATTATGAACTTTACATGTCTTGAGATGAGGGACACGGAACAAAGCTCTGATGCACAAAGTTCACCACAGAAACTTGTTCAGCAAGTATTGAGTGGAGGTTGGAGAGAAAACATTGAAGTTGCCGGAGAAAACGCACTTTCAAGGTATGATGCCACAGCTTATAACCAAATCTTACTAAATGCAAGACCACAAGGTGTCAACAAAGACGGCCCTCCAAAACATCGGATGTATGGAGTAACATACCTTCGTCTATCGGAAGATTTATTGCAACAATCAAATTTTGACATATTCAAAAAATTTGTGTTAAAGATGCATGCAGATCAGGATTACTGTGAAGATCCTCAAGAGTACAATCATGGCATACCACCATTAGAACGATCAGAACCAAATATTCCTGTTGATGTTCTTCTTGAGGCAACTAGGCCAATAGTGCCGTTCCCTTGGGATTCAGAAACAGACTTAAAAGTTGATGGCTAA 1587 0.4071 MRLCDIISGYKYSNINHKICKQQHPKKNSSSKMATFDKNLLLNYVPVYVMLPLGVVSVDNVLEDPEGIKEKLVKLRAAGVDGVMVDVWWGIIEKNGPKQYDWSAYRSLFQLVQESGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGQSDPDIFYTNRSGTRDNEYLTNGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFLKSEVIIDIEVGLGPAGELRYPSYPQNQGWVFPGIGEFQCYDKYLKEDFKSAAASAGHSEWELPDDAGTYNDVPESTEFFKTNGTYLTEKGKFFLTWYSNRLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYRAPNHAAELTAGYYNLDDRDGYCPIAKTVSRHHGIMNFTCLEMRDTEQSSDAQSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPQGVNKDGPPKHRMYGVTYLRLSEDLLQQSNFDIFKKFVLKMHADQDYCEDPQEYNHGIPPLERSEPNIPVDVLLEATRPIVPFPWDSETDLKVDG* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4541 528 SUPERFAMILY (Trans)glycosidases 42 522 IPR017853 -
Psa7g4541 528 ProSitePatterns Beta-amylase active site 2. 215 225 IPR018238 GO:0000272|GO:0016161
Psa7g4541 528 Gene3D Glycosidases 35 528 - -
Psa7g4541 528 PANTHER - 21 522 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PANTHER BETA-AMYLASE 6 21 522 - -
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 79 93 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 100 118 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 122 143 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 215 237 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 287 306 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 323 339 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 340 351 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 358 381 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 395 417 IPR001554 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Plant beta-amylase signature 205 214 IPR001371 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Plant beta-amylase signature 361 371 IPR001371 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Plant beta-amylase signature 403 412 IPR001371 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Plant beta-amylase signature 417 426 IPR001371 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Plant beta-amylase signature 432 448 IPR001371 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Plant beta-amylase signature 450 464 IPR001371 GO:0000272|GO:0016161
Psa7g4541 528 PRINTS Plant beta-amylase signature 465 479 IPR001371 GO:0000272|GO:0016161
Psa7g4541 528 ProSitePatterns Beta-amylase active site 1. 126 134 IPR018238 GO:0000272|GO:0016161
Psa7g4541 528 Pfam Glycosyl hydrolase family 14 48 470 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4541 Psa-Chr7 377590635 377594300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4541 27 526 Glycoside Hydrolase AT2G32290 65.269 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4541 K01177 - gmx:547931 869.766